Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00764 ATGGAGGGAAAAGGAGATCTGCCTCACCCCGCTTTGGTAGTTGCAGTGGCTATCAATGGAAAGAGCAAGAGTAAATATATCATTAGATGGTCAATCGAGAAGTTTCTTCCAGATGGGATCGTTAATTTCAAGTTATTACACGTTTATCCGATGATCACCGCTGTTCCAACTCCCATGGGGAATTCGATTCCAATTTCGGGAGTCCGTGACGATGTTGTTGCTGCATACAGAAAGGAAGTAGAATGGCAGGCCAGTGAAAAGCTCTTTCCTTATAAGAAAATGTTTGCTCAGAAAAAGGTTCAGTTAGATGTTAAAATAATCGAATCCAACGATGTGGCAAATGCGATATCAGAGGAACTTGCTAAATGCAATATCAATAATCTTGTTATAGGAGCTTCATCTCGTGGCCTTTTTTCGAGGAAGCTTAAAGGTTTGTCCTCGAAAATCTCGGCCAGGGCCCCGAGATTATGCACAGTCTATGCTATTTCAAAAGGAAAATTATTGTCGATACGTCCACCTAATATTTTGCCAAATGATAGCGTAGAAGACGATACAAGTTCTTCTGCAAACTCTTTTTCGAAATACTCTTCAAGCACACAGAACCACGGCTCGGTTAGTTCGTACTCTCCTTTCGATTCTCCATCTCTTCTGAAGCAGCGAGATCAAGCCCTCTCCACCATCAACCAGATTCTTATTAATACAAGAACAAGCTCCCTTCAAGGAAGCTATTCTATGCACCAATCGGTGGGTATGAAAGCTAGGAAGAATGATGGTATTGGCTCCGATGATGGTGAAAATGCGTTGAGTAGTTTCTCTAGTTCGAACAGCTTGGCTATTGATAATTTCTCACAAGTTTCTGATCAAGCTTCGTCTTCGGATGTGCTCAGTCGTCGGTCATGCGAAAGTCAGAATAATATTAACTTTGAGCTCGAAAAGCTGAGAATCGAACTAAGACATACACGAGGAATGTTCGCGCTTGCTCAAAAGGAGGCTTTTGATGCTACTCGAAAGGCGGATAATCTACATAGAATGCGATTGCAAGAAGCTACAAAGCTCAAGGATATTAGCATGAAGGAGGAGGCGGCCAAAGAATTGGCTAATCAAGCGAGGGAGAAATCTGAAGCTGCGCAAAGAGAAGCCATTTTGACGAGAGAACGTGCGGAAAGAGAGGCCATACAGAGGAGAGAAGCAGAGGCCATCGCCTTGCGAGATAAAAGAGAAAAGGAAAAGCTTCAGAGCGCTCTAATGGGGGCATTGCAGAAATACCAAGTATTTTCATGGGAAGAGATCGTAGCTTCGACTTCGTCTTTCTCGGTGGATCTCAAGATCGGAATCGGAGCTTATGGAACAGTTTACAAATGTAATTTACGGAATACAGTTGCAGCCGTGAAGGTTCTTCATACTAGAGAGCGTAAAAAAAACAAGCAATTCTTGCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCGCATTTGATTCTTCTTCTCGGAGCATGTCCAGATCAAGGCTGCCTGGTTTACGAGTATATGGAGAACGGAAGCTTGGAAGATCGATTGGTTCGAAAAGACGATACGCCTCCCATCCCTTGGTTTGACAGATTTCGAATTGCTTGGGAAGTCGCTTCAGCTCTTGTTTTTCTTCACAGTTCAAAGCCAAAGCCTATCGTTCATCGCGATCTCAAGCCGACCAACATTTTGCTCGATCGTAACCTCGTGAGCAAGATCGGAGACGTAGGCCTTTCGAGGGTGATAAATTCAGACGCATTTCCTGTTTCCTGCAAGGAAACCGGACTAGTCGGAACTCTTTGTTACATAGATCCAGAGTATCAAAGGAGCGGTGAAATTTCTCCAGAATCTGATGTTTACGCTTTTGGAATCGTGATATTGCAGCTTCTTACTGCAAAACCAGCAATGGCATTGGCTTATCTTGTGGAAAATGAGCTCAGGGATGGAAATTTGATGAAGATTTTAGATTCAGAGGCTGGAAATTGGCCGGTCGAAGAGACGAAGCAATTGGCTGAGCTGGGACTTAATTGCACAGAGCTTCGTCGAAAAGATCGGCCAGATTTGCGGGACAGAGTTCTTCCTGTACTCGAGAAATTGAAAATGGCGGCTGATCGAGCTCGTAGTTACTGCTTTAGCTTACCATCTGCAACTCCTAACCATTTCATCTGCCCCATTCTCAAGAATGTAATGACAGATCCTTGTGTTGCTTCGGATGGATACACTTACGATAGGCGGGCGATAGAGAAGTGGCTTCGAGAGGAAGATAAATCACCGATGACGAATTTGCCCTTGCCGGACAAGAATTTAATCCCTAATTACACTCTTCTCTCTGCAATACTTGAATGGAAGTCAATGAAAAGCTGA 2370 43.67 MEGKGDLPHPALVVAVAINGKSKSKYIIRWSIEKFLPDGIVNFKLLHVYPMITAVPTPMGNSIPISGVRDDVVAAYRKEVEWQASEKLFPYKKMFAQKKVQLDVKIIESNDVANAISEELAKCNINNLVIGASSRGLFSRKLKGLSSKISARAPRLCTVYAISKGKLLSIRPPNILPNDSVEDDTSSSANSFSKYSSSTQNHGSVSSYSPFDSPSLLKQRDQALSTINQILINTRTSSLQGSYSMHQSVGMKARKNDGIGSDDGENALSSFSSSNSLAIDNFSQVSDQASSSDVLSRRSCESQNNINFELEKLRIELRHTRGMFALAQKEAFDATRKADNLHRMRLQEATKLKDISMKEEAAKELANQAREKSEAAQREAILTRERAEREAIQRREAEAIALRDKREKEKLQSALMGALQKYQVFSWEEIVASTSSFSVDLKIGIGAYGTVYKCNLRNTVAAVKVLHTRERKKNKQFLQELEILSKIHHPHLILLLGACPDQGCLVYEYMENGSLEDRLVRKDDTPPIPWFDRFRIAWEVASALVFLHSSKPKPIVHRDLKPTNILLDRNLVSKIGDVGLSRVINSDAFPVSCKETGLVGTLCYIDPEYQRSGEISPESDVYAFGIVILQLLTAKPAMALAYLVENELRDGNLMKILDSEAGNWPVEETKQLAELGLNCTELRRKDRPDLRDRVLPVLEKLKMAADRARSYCFSLPSATPNHFICPILKNVMTDPCVASDGYTYDRRAIEKWLREEDKSPMTNLPLPDKNLIPNYTLLSAILEWKSMKS 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10637430 10641324 + Bda024085.1 Bda06g00764 8346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00764 789 Gene3D HUPs 13 163 IPR014729 -
Bda06g00764 789 SMART serkin_6 437 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00764 789 Gene3D Phosphorylase Kinase; domain 1 416 509 - -
Bda06g00764 789 Gene3D Transferase(Phosphotransferase) domain 1 510 712 - -
Bda06g00764 789 Pfam U-box domain 720 788 IPR003613 GO:0004842|GO:0016567
Bda06g00764 789 MobiDBLite consensus disorder prediction 242 267 - -
Bda06g00764 789 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 789 IPR013083 -
Bda06g00764 789 ProSiteProfiles U-box domain profile. 718 789 IPR003613 GO:0004842|GO:0016567
Bda06g00764 789 MobiDBLite consensus disorder prediction 179 211 - -
Bda06g00764 789 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 153 - -
Bda06g00764 789 ProSitePatterns Protein kinases ATP-binding region signature. 443 464 IPR017441 GO:0005524
Bda06g00764 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Bda06g00764 789 ProSiteProfiles Protein kinase domain profile. 437 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00764 789 CDD STKc_IRAK 443 701 - -
Bda06g00764 789 SMART Ubox_2 722 784 IPR003613 GO:0004842|GO:0016567
Bda06g00764 789 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 10 785 - -
Bda06g00764 789 PANTHER OS02G0152300 PROTEIN 10 785 - -
Bda06g00764 789 Coils Coil 352 390 - -
Bda06g00764 789 Pfam Protein kinase domain 439 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00764 789 MobiDBLite consensus disorder prediction 173 211 - -
Bda06g00764 789 CDD RING-Ubox_WDSUB1_like 723 763 - -
Bda06g00764 789 SUPERFAMILY RING/U-box 717 786 - -
Bda06g00764 789 CDD STK_N 13 165 - -
Bda06g00764 789 SUPERFAMILY Protein kinase-like (PK-like) 419 692 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00764 - - - jre:109002487 967.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00764 Bda-Chr6:10637430 Bda11g00887 Bda-Chr11:8708552 4.47E-132 dispersed
Bda11g01037 Bda-Chr11:10117529 Bda06g00764 Bda-Chr6:10637430 1.13E-156 transposed
Bda05g00084 Bda-Chr5:4040675 Bda06g00764 Bda-Chr6:10637430 1.76E-89 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007149 1 0 1 0 1 1 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 0 0 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69676 PF00069 Pkinase 2.60E-42 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00764 Bda_Chr06 FPKM 12.8666 13.873068 1.875572 2.324462 4.542999 5.200013 4.043988 7.239545 7.079404