Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00769 ATGGAACAGAAGCACATTTTGCTATCTGCTTTGGGCGTGGGGGTAGGAGTAGGGGTGGGGCTTGGATTGAGCTCTGCCCAAGCTGTAAGTAAATGGGTCGGAGGAAATAACTCGCCGGATGAGTTTTCCGGTGAGCAGATTGAGCAGGAGCTGATGAGGCTGGTGATTGATGGGAAAGCAACCAAAGTTACGTTTGATGAGTTTCCTTATTATCTAAGTGAGCGGACTCGAGTGTTATTGACAAGTGCTGCATATGTTCATTTAAAGCAGATCGACATTGCCAAGCACACGCGCAATCTTTCACCAGCAAGTAGACTTATTTTGCTCTCAGGGACCTGCTGGTGCGATTTATTTTCTCAAATGCTAGCTAAGGCTTTGGCACATTATTTTGAATCGAAGTTGCTTTTGTTAGACGTTTCTGACTTTTCTCTTAAGATGCAGAGCAAATTTGGTCGTGTGAGGAAAGAATCTTCCTTCAAGAGGTCCATCTCTGAGGTGACATTTGAAAAAATGTCGAATCTTTTTGGTTCTTTCTCAATCCTTCCTCCGAGTGGGATCGCTAAAGGAACGATACGCCGAACGGATAGTTCTATGGAAATAAAATCGAGAAACTGTGATGGGTCCGAAAACCCTCCAAAACTTCGTAGAAATGCCTCTGCTGCCTCTGACATTAGTAGCTGCTCTTCAAAATCTGCTTCCTCAGATCAAGTTTCGTTGAAGCGCACGAGCAGCTGGTTTTTTGATGAAAAACTGTTTCTACAATCGCTATACAAGGTGCTAGTATCGGTATCTGAAACTGGCTCCATTATTTTGTACCTGAGAGACGTCGAAAAGCTTCTTCTCCATTCACAAAGATTTTACCAAATGGTCAATAAGTTGTTGAACAAACTCTCTGGCTCGGTTTTAGTTCTCGGCTCTCGAATGGTGGACCCAGAAGATGATTTGAGAGAAGTGGATGAACGGATCAGCGTTTTATTTCCATACAACATCGAAATCAAACCCCCGGAAGACGAGACTCATCTTGTCAACTGGAAGGCTCAGCTGGAAGAGGACATGAAGATGATCCAGTTTCAAGATAATAAAAATCATATTGCAGAAGTTCTTGCTGCAAATGATCTTGAATGTGATGATCTGGGTTCGATTTGCCATGCCGATACCATCGTGTTGAGCAATTACATCGAAGAGATCGTTGTTTCTGCAATATCATATCATTTGATGCATAGCAAAGACCCGGAATATCGAAATGGAAAACTTCTAATATCTTCCAAGAGTTTGTCCCATGGATTGAGCATATTTCAGGAAGGAAAAAGTAATGGAAAAGATACTATGAAGTTAGAGACAAATGCTGACTCTTCAAAGGAAGGTGGAGATGAGGCTCTTAGAACAAAAACAGATTCAAAATCCGAGGCGGAAAAATCTGGTTCTGCAGTTAAGAAGGATGGAGAGAATGCAAATCCTCAAAAAGCACCTGAAGTTGCTCCGGACAATGAGTTTGAAAAACGTATCCGGCCGGAAGTTATTCCGGCAAACGAGATCGGAGTGACATTTGATGATATCGGAGCGATGGACGAGATTAAAGAGTCACTTCAAGAACTCGTAATGCTACCTCTCCGAAGGCCAAATCTCTTCAATGGAGGTCTTCTCAAGCCTTGCAGAGGCATTCTTCTATTCGGACCGCCTGGAACGGGAAAGACAATGCTGGCGAAGGCCATTGCCAACGAAGCTGGAGCTAGTTTCATCAACGTTTCTATGTCCACCATTACTTCAAAATGGTTTGGCGAAGACGAAAAGAATGTTAGAGCTCTCTTCACACTTGCTGCAAAGGTGTCTCCGACAATTATTTTTGTCGACGAGGTCGATAGTATGCTCGGGCAGAGGACTCGAGTAGGAGAGCATGAGGCCATGAGGAAAATAAAGAATGAATTTATGACTCATTGGGATGGGCTTTTGACAAAGCCGGGTGAGCGAATTCTCGTTCTTGCTGCCACTAACCGGCCGTTTGATCTCGACGAAGCGATCATCCGTCGTTTTGAGCGAAGCAGAATTATGGTTGGCCTCCCCACGATCGAGAGCCGAGAGATGATCTTGAAAACTCTTCTGGCGAAAGAAAAGGTAGAAAACCTTGACTATAAGGAGCTCGCTACTATGACAGAAGGATTCAGCGGAAGCGATCTGAAGAATTTATGCGTGACGGCTGCATACCGACCGGTGAGGGAGCTGCTCCAACAGGAGAGAATGAAGGATAAGGAGAAGAAGAAAAAAGAGGAAAACGGAAAAAGCTCAGATGAGAAGAGCTCGGATTCTTCAGCATTGAAAGAAGAAGATAAAGAAGAACAAGTAATTGTTTTGAGGTCTTTGAATATGGAAGATATGAAACAGGCAAAAAATCAGGTGGCTGCGAGTTTCGCTGCTGAAGGATCGATAATGGGCGAACTAAAGCAATGGAACGAATTGTACGGAGAGGGCGGTTCAAGGAAAAAGCAACAGCTAACTTACTTCCTCTAG 2505 43.87 MEQKHILLSALGVGVGVGVGLGLSSAQAVSKWVGGNNSPDEFSGEQIEQELMRLVIDGKATKVTFDEFPYYLSERTRVLLTSAAYVHLKQIDIAKHTRNLSPASRLILLSGTCWCDLFSQMLAKALAHYFESKLLLLDVSDFSLKMQSKFGRVRKESSFKRSISEVTFEKMSNLFGSFSILPPSGIAKGTIRRTDSSMEIKSRNCDGSENPPKLRRNASAASDISSCSSKSASSDQVSLKRTSSWFFDEKLFLQSLYKVLVSVSETGSIILYLRDVEKLLLHSQRFYQMVNKLLNKLSGSVLVLGSRMVDPEDDLREVDERISVLFPYNIEIKPPEDETHLVNWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTIVLSNYIEEIVVSAISYHLMHSKDPEYRNGKLLISSKSLSHGLSIFQEGKSNGKDTMKLETNADSSKEGGDEALRTKTDSKSEAEKSGSAVKKDGENANPQKAPEVAPDNEFEKRIRPEVIPANEIGVTFDDIGAMDEIKESLQELVMLPLRRPNLFNGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERSRIMVGLPTIESREMILKTLLAKEKVENLDYKELATMTEGFSGSDLKNLCVTAAYRPVRELLQQERMKDKEKKKKEENGKSSDEKSSDSSALKEEDKEEQVIVLRSLNMEDMKQAKNQVAASFAAEGSIMGELKQWNELYGEGGSRKKQQLTYFL 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10690578 10695734 - Bda024090.1 Bda06g00769 8351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00769 834 MobiDBLite consensus disorder prediction 439 478 - -
Bda06g00769 834 CDD AAA 520 686 - -
Bda06g00769 834 Coils Coil 737 757 - -
Bda06g00769 834 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 834 - -
Bda06g00769 834 Gene3D - 514 802 IPR027417 -
Bda06g00769 834 MobiDBLite consensus disorder prediction 194 210 - -
Bda06g00769 834 MobiDBLite consensus disorder prediction 432 499 - -
Bda06g00769 834 ProSitePatterns AAA-protein family signature. 657 676 IPR003960 GO:0005524|GO:0016887
Bda06g00769 834 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 834 - -
Bda06g00769 834 MobiDBLite consensus disorder prediction 741 776 - -
Bda06g00769 834 SMART AAA_5 550 688 IPR003593 -
Bda06g00769 834 Pfam AAA+ lid domain 707 750 IPR041569 -
Bda06g00769 834 MobiDBLite consensus disorder prediction 191 231 - -
Bda06g00769 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 751 IPR027417 -
Bda06g00769 834 Gene3D - 688 801 - -
Bda06g00769 834 Pfam ATPase family associated with various cellular activities (AAA) 554 680 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00769 - - - jre:109010848 1277.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00769 Bda15g00666 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00769 Bda-Chr6:10690578 Bda08g00498 Bda-Chr8:5073205 0 dispersed
Bda06g00769 Bda-Chr6:10690578 Bda10g00619 Bda-Chr10:40200828 1.14E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g264 . . . . . Bpe07g00999 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00769 . . . . Bma12g01184 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g811 . . . . . Bpe07g00999 . Bma14g02021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0044 . . . . . . . Bda06g00769 Bda15g00666 . . . Bma12g01184 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00769 Bda_Chr06 FPKM 12.722775 13.302504 7.075221 7.671336 22.753899 22.113007 23.218319 4.34105 3.821408