Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00780 ATGCTTTCTGAGAATACTAGAAAATCATTCCGACGGTTTCTGGAACCCTGGGGAAGTTTCCTTCAGCTAGCTTCATGCTTGATTGCAGTTTCACTTGATCCTTTCTTCTTGTACATCCCTGTCGTTAACGATCATGAAAAGTGCTTTGACTTTGACAAGAAGTTGCGGATATCAGCTTTGGTTTTGCGATCGGTCACAGACATCATTTTCATGCTTCATATTGCTTTTCAGTTTCGTACTGGATATGTTGCGAGGCCCATTCTGTACCACATAGATGGAGTAAATGAAGAAGTAGCTGGCTCTTGGGAAATACCTAAGACATATATATTTTCTTACTTCTTAATCGACATTCTATCACTTCTTCCCCTCCCTCAGGTAGTAATTTTATCTATTATTCCAGAGATGAAAGGCTCAAAATCTTTGATTGCAAAGAACATTCTTATAGCACTTGTTTTATTGCAATATGTTCCCAGATTTGTTCGAATTTACCCATTATACAAGAAACTTACGTGGACGCCAAGGATTTTCAAGGGAACTCCTTGGACTAAAGCTGCTCTTAATCTCTTTCTCTACATGCTAGCAAGTCATGTACTTGGAGCATTGTGGTACTTCCTTTCCATTGAAAGAGAGATAACATGCTGGCAAGAAGCTTGTGAGGGTCATCCTGGTTGTGACCATAGTTCCTTCTTCTGTGATGATGGGATAAGAGCTACTGAATTCCTTCATGATATGTGTCCCATAGATACTCCAAATACAAATCTTTTTGACTTCGGTATATTCCTGGATGCCCTTCAGTCTGGTATTGTGGAGTCAGTCAATTTACCCCAAAAGCTTTTCCGTTGCCTCTGGTGGGGCCTCCAAAATTTGAGTTCTCTGGGTCAAAATCTCAAAACAAGTACCTATGTCTGGGAGAATATTTTTGCAGTTTTTATATCCACCTCTGGCTTAGTGCTATTTTTATATTTCATTGGAAATATGCAGACATATATGCAGTTGAAAATTGTAAAAAAAGAGGAGAAGAGAATGGAGATAAGGTCTAAGGCGCGAGCTGTTGACTTATGGATGTCCAACAATCTTCTACCTGAACGTATTAAAAGGAGAATCAAGCATTCTATAGAAAAGAAATGGCATGAAATCAGAACTGTGGATTTAGAAAATTTGATTCCAATTCTTCCCATGGATATCCAGAAAGATATAAAACGTTTTTTCGGTTCAGATCTTATTATGAGAGTCCCAGTGTTTGCATTGATGGATTATCAGCTGTTGGATGCCACGTGTGGTCGTCTGAAACCAGTAGCCTATTCCACAGAGAGCTACATCGTTCGGAAAGGTGATCCAGTTGAGGAAATGTGCTTCATCTTCCGTGGCAAGGTGTTGTCATGGTTGACGGATAAAAATGTTGGAAGAACTGAATTCCTTAGTTCCGTAAAACTACAGACTGGTGACTTCTGTGGAGAAGAACTATTGACATGGGCTTTCAATGTTCGTCCCTTGACTAATCTCCCCATCTCAAATCAAACCGCCCAAGCTCTCACAGAAGTCGAAGCATTTGTCCTAACAGCCGAAGACTTGAAATTCTTGATGTCTCAGCTCCGGCTACAACGCGGCATGAAGCTCCGTCCCATTTTGAGATTTTACTCAGCCCAATGGAGGAATTGGGCAGCTTACACCATCCAAATAGAATGGCGTCACTACGCCAAAAGGAAGCTCGAAGAATCACTTCGAGAAGAAGAGATAAGATTGCAAGATGCATTGGCAAACACTTGTGGAAGATCTACAAGTATAGGTGCTACCTTTTATGTATCTCGATTTACTGCTAATGCTCTTGGTTTAATCCGAGGTCGGAAGGCCAAAGAGGCCGAGATAATTACAGCCATGCATCTTCAGAAGCCGGCCGAGCCTGATTTTGTAGGGGAGGACAGTAGTTAA 1929 41.11 MLSENTRKSFRRFLEPWGSFLQLASCLIAVSLDPFFLYIPVVNDHEKCFDFDKKLRISALVLRSVTDIIFMLHIAFQFRTGYVARPILYHIDGVNEEVAGSWEIPKTYIFSYFLIDILSLLPLPQVVILSIIPEMKGSKSLIAKNILIALVLLQYVPRFVRIYPLYKKLTWTPRIFKGTPWTKAALNLFLYMLASHVLGALWYFLSIEREITCWQEACEGHPGCDHSSFFCDDGIRATEFLHDMCPIDTPNTNLFDFGIFLDALQSGIVESVNLPQKLFRCLWWGLQNLSSLGQNLKTSTYVWENIFAVFISTSGLVLFLYFIGNMQTYMQLKIVKKEEKRMEIRSKARAVDLWMSNNLLPERIKRRIKHSIEKKWHEIRTVDLENLIPILPMDIQKDIKRFFGSDLIMRVPVFALMDYQLLDATCGRLKPVAYSTESYIVRKGDPVEEMCFIFRGKVLSWLTDKNVGRTEFLSSVKLQTGDFCGEELLTWAFNVRPLTNLPISNQTAQALTEVEAFVLTAEDLKFLMSQLRLQRGMKLRPILRFYSAQWRNWAAYTIQIEWRHYAKRKLEESLREEEIRLQDALANTCGRSTSIGATFYVSRFTANALGLIRGRKAKEAEIITAMHLQKPAEPDFVGEDSS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10863321 10866445 + Bda024104.2 Bda06g00780 8362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00780 642 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 12 638 - -
Bda06g00780 642 ProSiteProfiles cAMP/cGMP binding motif profile. 413 499 IPR000595 -
Bda06g00780 642 CDD CAP_ED 413 530 IPR000595 -
Bda06g00780 642 SUPERFAMILY cAMP-binding domain-like 339 530 IPR018490 -
Bda06g00780 642 Pfam Cyclic nucleotide-binding domain 432 530 IPR000595 -
Bda06g00780 642 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 638 - -
Bda06g00780 642 Gene3D Jelly Rolls 411 532 IPR014710 -
Bda06g00780 642 Coils Coil 567 587 - -
Bda06g00780 642 Pfam Ion transport protein 33 331 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda06g00780 642 Gene3D - 28 333 - -
Bda06g00780 642 SUPERFAMILY Voltage-gated potassium channels 19 331 - -
Bda06g00780 642 SMART cnmp_10 413 546 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00152 Bda-Chr5:6374711 Bda06g00780 Bda-Chr6:10863321 4.54E-131 dispersed
Bda06g00780 Bda-Chr6:10863321 Bda12g00522 Bda-Chr12:7998729 2.87E-138 dispersed
Bda15g00779 Bda-Chr15:11637413 Bda06g00780 Bda-Chr6:10863321 0 wgd
Bda05g00114 Bda-Chr5:5673130 Bda06g00780 Bda-Chr6:10863321 2.52E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00780 K05391 - sind:105160375 701.434