Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00784 ATGGACTTGGAAAGCATCGAATGCGTTTCATCTTCCGATGGTTTCGATGAAGGTGAAATCCATCAACACCGTACCCTTCACTCGCATCCGCATCCACATCCACATCCTCTTCTTCACCCTGACATTTCGGCGTCGAAGCCTCGCAATGGCGCCAACAGTGGCGGTATAATGGGCTCAACTGCCACTGCTCCGGCCACCAGCGTCCACGAGTTGCTTGAGTGCCCCGTCTGCACTAATTCTATGTACCCACCAATCCATCAGTGTCATAATGGACATACCTTGTGTTCCACCTGCAAAACGAGGGTTCACAACCGCTGCCCCACTTGTCGACAAGAGCTCGGAGACATTAGGTGTCTAGCTCTAGAAAAAGTGGCCGAGTCACTCGAGCTTCCTTGCAAGTATTACTCCTTGGGATGCCCCGAAATCTTCCCGTATTACAGCAAACTTAAGCATGAAGCTATGTGCAACTTCAGACCGTATACTTGTCCTTATGCTGGATCTGAGTGCTTGGTCGTGGGCGATATTCCTTTCTTGGTTGCTCATCTGAGGGACGATCACAAAGTGGACATGCACACTGGCTGTACATTTAATCATCGTTATGTAAAATCCAATCCTCGGGAAGTTGAGAATGCCACTTGGATGCTTACTGGAGAGCTTTATCGGATGGTCAAACCCGATGATTGCTTTTGGAGCATAGAGGACCAAAACACCATCTCTATTCTTTTGACCAAAGTTGACCAAATGGAGTGGTGGAAGTCATTGGTAAAAGGGGATCCCGAGATTGATACGCAGAAGGTTGAACCAGAGTCCAGTAAACTATCTGACCTAGATCCAGAAACGCGCCAAACTGTCGAAAAGATGATGTTTGATCAAAGGCAAAAGAGTATGGGACTTCCAACCAGCGATGAAATGCAGAAGCAAGAGATTTTGAAGAAGTTCATGGCTGAGCATCCAGAGATGGACTTTTCGAAGGCCAAGATGCCGTCGTAG 990 47.88 MDLESIECVSSSDGFDEGEIHQHRTLHSHPHPHPHPLLHPDISASKPRNGANSGGIMGSTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYTCPYAGSECLVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTGELYRMVKPDDCFWSIEDQNTISILLTKVDQMEWWKSLVKGDPEIDTQKVEPESSKLSDLDPETRQTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSKAKMPS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10882064 10886471 - Bda024107.2 Bda06g00784 8366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00784 329 Pfam CS domain 199 244 IPR007052 -
Bda06g00784 329 CDD p23_NUDC_like 215 255 - -
Bda06g00784 329 ProSiteProfiles Zinc finger RING-type profile. 74 110 IPR001841 -
Bda06g00784 329 SUPERFAMILY HSP20-like chaperones 197 327 IPR008978 -
Bda06g00784 329 CDD RING-HC_SIAHs 72 110 - -
Bda06g00784 329 Gene3D - 183 289 IPR008978 -
Bda06g00784 329 ProSiteProfiles Zinc finger SIAH-type profile. 127 187 IPR013010 GO:0008270
Bda06g00784 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 126 IPR013083 -
Bda06g00784 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 182 IPR013083 -
Bda06g00784 329 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 216 - -
Bda06g00784 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 216 - -
Bda06g00784 329 SUPERFAMILY TRAF domain-like 127 216 - -
Bda06g00784 329 SUPERFAMILY RING/U-box 59 114 - -
Bda06g00784 329 MobiDBLite consensus disorder prediction 25 60 - -
Bda06g00784 329 ProSiteProfiles CS domain profile. 159 255 IPR007052 -
Bda06g00784 329 Pfam Seven in absentia protein family 116 216 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bda06g00784 329 MobiDBLite consensus disorder prediction 46 60 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00126 Bda06g00784 CCT
Bda05g00126 Bda06g00784 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00784 Bda-Chr6:10882064 Bda11g00212 Bda-Chr11:2638936 5.76E-112 dispersed
Bda15g00783 Bda-Chr15:11667934 Bda06g00784 Bda-Chr6:10882064 1.12E-65 wgd
Bda05g00126 Bda-Chr5:5975431 Bda06g00784 Bda-Chr6:10882064 1.20E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00784 K04506 - zju:107414770 392.119