Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00795 GCGGAAGAAGACTGGAAGATTAAGCGGGAAGTTCTAGTGCAGAAGAAGGTGAGGAGCGTGGATGTGAAAGAAGCTCTGCGTCTTCAAAATGAAAATAACTTCGTGATTCTTGACGTTAGGCCTGAAGCAGAGTTCAAAGAGGGCCATCCACCGGGCGCCATTAACGTCCAAATATACAGGCTGATAAAGGAGTGGACAGCTTGGGACATCGCTAGGCGAGCTGCATTTGCATTTTTCGGCATCTTCTCTGGAACTGAAGAGAACCCAGAATTTCTCCAAATTGTGGAATCAAAGATGTCTAAAGACACTAAGATAATAGTCGCCTGCTCTTCTGGGGGGACCATGAAACCCACCCAAAATCTTCCTGAAGGTCAACAATCAAGATCGCTGATAGCAGCCTACGTGCTGGTTCTAAATGGCTACACCAACGTGTTTCACTTAGAAGGAGGCCTGTATTCGTGGTTCAAGGAAGGACTTCCAGCAGAGGCAGAAGATTGA 498 46.99 AEEDWKIKREVLVQKKVRSVDVKEALRLQNENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQIVESKMSKDTKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYVLVLNGYTNVFHLEGGLYSWFKEGLPAEAED 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11009567 11010348 + Bda024118.1 Bda06g00795 8377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00795 165 Pfam Rhodanese-like domain 22 155 IPR001763 -
Bda06g00795 165 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC 1 164 - -
Bda06g00795 165 Gene3D - 4 163 IPR036873 -
Bda06g00795 165 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 1 164 IPR043186 -
Bda06g00795 165 ProSiteProfiles Rhodanese domain profile. 30 163 IPR001763 -
Bda06g00795 165 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 15 160 IPR036873 -
Bda06g00795 165 SMART rhod_4 20 160 IPR001763 -
Bda06g00795 165 CDD RHOD 24 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00795 - - - mcha:111011450 299.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00622 Bda-Chr6:8524701 Bda06g00795 Bda-Chr6:11009567 1.02E-09 dispersed
Bda06g00795 Bda-Chr6:11009567 Bda13g00004 Bda-Chr13:14073 6.23E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00502 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.5 4.1e-147 517.7
Bda14g00502 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.6 6.4e-114 407.1
Bda14g00903 . 38 274 Sulfurtransferasese/Rhodanese AT5G23060 50.2 6.2e-60 228.0
Bda11g00218 . 1 426 Sulfurtransferasese/Rhodanese AT4G01050 51.8 1.9e-119 426.4
Bda01g01650 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 57.4 8.6e-63 238.4
Bda01g01648 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 56.5 9.5e-62 235.0
Bda15g00120 . 91 459 Sulfurtransferasese/Rhodanese AT2G40760 72.7 1.1e-153 540.0
Bda03g01402 . 40 221 Sulfurtransferasese/Rhodanese AT3G08920 61.5 1.3e-64 243.0
Bda06g00622 . 1 305 Sulfurtransferasese/Rhodanese AT4G24750 59.3 3.4e-100 361.7
Bda09g01328 . 17 296 Sulfurtransferasese/Rhodanese AT5G19370 57.4 5.9e-84 307.8
Bda12g00925 . 117 480 Sulfurtransferasese/Rhodanese AT5G55130 70.3 1.7e-149 525.8
Bda06g00795 . 1 163 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.4e-74 276.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00795 Bda_Chr06 FPKM 4.314437 3.871223 6.337558 7.196794 2.414864 2.04821 1.415721 0.0 0.318597