Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00816 ATGAGTGGAAGCACAAATTCGGTCACTGGAAATGAGAGCTTGAAAGCTGAATGCAACTCTAAGCGGGATGCTGAGTTTGAAGGTGCTGATGAGACCGCGAAGAAGCGGAAAACTGAAGCTTCTTCGGAATCTACTGACAGAAACCATGAAGTTGAAAACGGCCGTCTTGGTGGTGATGTGCGCGATCAAAATAATGGTTCTGCGATTGTTAAGATGAGTAGAGAAGTGAGTTTTGAGATTGAAGCTGATGTGGCCGAGGATAAAGGATCTAGGCATGCTATGGAGGATGCTAACGTCGTGCTTTTGGATGCAAGCTTGGATTTCCCTGGAAAATTAAGATGTGCTCATTTTGCTGTCTACGACGGACATGGAGGTCGATTAGCGGCAGAGCACGCCCAAAAGTATTTACATTTGAATGTGCTCTCAGCCGGCTTACCACGTGAGTTGGTGGATGTAAAAGCAGCCAAAAGAGCAATTTTAGATGGTTTTCGAAAGACTGATGAGTCACTTCTTCAAGAAAGTACTGCTGGGGGATGGCAAGATGGCGCTACTGCTGTGTGTGTCTGGATTTTAGGCCAAAAGGTTTTTGTTGCTAATGTTGGGGATGCAAAGGCTGTGGTTGCACGATCTCCCGCGGGTATGAATTTGCAAAATCATCCTGAATTTGAAAGTTCCTTAAAGGCTATAGTTTTGACTAGGGAACACAAAGCAATATATCCACAGGAGCGAGCTCGGATTGAGAAGGCTGGTGGTATAGTTAGCTCTAATGGGAGAATACAGGGGCGCCTGGAAGTATCTCGGGCATTCGGAGATCGCCATTTCAAGAAGGTAGGTGTCGTTGCAACCCCAGATATACATTCATTTGACTTAACTGAAAGGGACCATTTTATGATTATTGGTTGTGATGGCCTCTGGGGGGTATTTGGGCCTAATGATGCTGTTGATTTTGTTTGGAAACTGTTGAAGGCAAGACTGCTTGTTTCTTTTTGGTATCTATTGATCTTTTTTTTCTCATTCATGCGAAGTTATTGCTTAGAAAGCACAAAATGTCAGCAGGATGAAGGAGCTGTAACAGCTGTGAGTCGCCATCTTGTAAGAGAAGCCGTTCGAGAGCGACGATGTAAAGATAACTGTACTGCAATTGTCATTGTTTTCCGGCATAAGTCAGACTAG 1173 44.42 MSGSTNSVTGNESLKAECNSKRDAEFEGADETAKKRKTEASSESTDRNHEVENGRLGGDVRDQNNGSAIVKMSREVSFEIEADVAEDKGSRHAMEDANVVLLDASLDFPGKLRCAHFAVYDGHGGRLAAEHAQKYLHLNVLSAGLPRELVDVKAAKRAILDGFRKTDESLLQESTAGGWQDGATAVCVWILGQKVFVANVGDAKAVVARSPAGMNLQNHPEFESSLKAIVLTREHKAIYPQERARIEKAGGIVSSNGRIQGRLEVSRAFGDRHFKKVGVVATPDIHSFDLTERDHFMIIGCDGLWGVFGPNDAVDFVWKLLKARLLVSFWYLLIFFFSFMRSYCLESTKCQQDEGAVTAVSRHLVREAVRERRCKDNCTAIVIVFRHKSD 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11414284 11418290 - Bda024147.3 Bda06g00816 8398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00816 390 CDD PP2Cc 84 385 IPR001932 -
Bda06g00816 390 SMART PP2C_4 75 383 IPR001932 -
Bda06g00816 390 Gene3D - 77 390 IPR036457 -
Bda06g00816 390 MobiDBLite consensus disorder prediction 1 15 - -
Bda06g00816 390 Pfam Protein phosphatase 2C 85 322 IPR001932 -
Bda06g00816 390 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 23 382 - -
Bda06g00816 390 PANTHER PROTEIN PHOSPHATASE 2C 23 382 IPR015655 GO:0004722|GO:0006470
Bda06g00816 390 ProSiteProfiles PPM-type phosphatase domain profile. 81 385 IPR001932 -
Bda06g00816 390 MobiDBLite consensus disorder prediction 1 65 - -
Bda06g00816 390 SUPERFAMILY PP2C-like 73 386 IPR036457 -
Bda06g00816 390 MobiDBLite consensus disorder prediction 16 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00816 Bda-Chr6:11414284 Bda12g00106 Bda-Chr12:854926 1.17E-30 dispersed
Bda06g00816 Bda-Chr6:11414284 Bda13g01275 Bda-Chr13:35110645 7.32E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00816 K17500 - csv:101216467 478.018