Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00824 ATGTTTGAAAACCGTGTTCCACACATGTTGGACAATGATTATACCCCATACTCTGCGCTTGACATCTTTGTCAAAGATTTGGGCATTGTCTCTCGTGAATGTGCATCGCTGAAAGTTCCCCTTCCGATTTCAACTGTTGCACACCAGCTCTTTTTGTCAGGTTCGGCTGCAGGTTGGGGTCGGCAAGATGATGCTGGTGTGGTTAAGGTATATGAGACTCTAACAGGAGTGAAGGTTGCAGGAGAACCTCCCATTCTTAAGAAAGAAGTTGTATTGAAATCTCTTCATCCAGAATGGCCTGAAGATCCAATTCCTGAGATTCAAATTTTAAACGAGAAAAGTATAAAGACTTTGGTAGTGTTGGACGATGATCCAACGGGAACACAAACTGTTCATGACATTGAGGTGTTAACAGAATGGTCTGTGGAGTCCCTCATCGAACAATTCCGTAAAAGTCCTAAATGCTTTTTCATATTGACGAACTCGAGATCATTGAGTTCAAGGAAGGCCAGCTTATTAATAGAAGAAATCTGCAAAAACATACGAATCGCATCTGAATCTGTCAGGAACGCAGATTTTACTGTAGTTTTGAGAGGAGATTCAACCTTACGAGGTCATTTTCCTGAGGAACCCGATGCTGCTGTCTCGGTCTTAGGAGAGATGGATGCATGGATTATTTGTCCCTTTTTCTACCAAGGAGGGCGTTATACTATTGACGACATACATTATGTTGCAGATTCTGATAAGCTTGTCCCTGCCGGGGAGACAGAGTTTGCAAAAGATGCATCATTTGGCTTCAAATCTTCAAACCTTTGTGAGTGGGTAGAAGAGAAAACAGCTGGCCGCATTCAAGCCAACACCGTTTCCTCTATTTCTATTCAACTTCTTAGAAAGGGTGGACCAGAGGCTGTTTGTGAGCATCTGTGCAATTTGCAGAAGGGAATGGTGTGCATAGTTAATGCAGCCAGTGAAAGGGACATGGCTGTCTTTGCAGCAGGAATGATCAAGGCAGAATTGAAAGGCAAGCGGTTTTTATGTCGGACAGCTGCTAGCTTTGTTTCTGCCAGGGTTGGAATTATTCCACGAGCTCCTCTTTTGCCAAAAGATGTTGGGATTGACAAAGAAAGAAATGGCGGTCTTATAGTTGTGGGTTCGTATGTCCCAAAAACAACAAAACAGGTCGAAGAACTTCAATTGCTATGTAGCTCGTTTATTAGAAGCATTGAGGTTTCTGTCACTAGACTTGCTATGAGCTCGCCAGAAGAGAGGGACGAGGAAATTAGGAAAACAGCTGAGATGGCCGATGTTCTTCTTGGGACTCAGAAGGAAACTCTAATAATGACTAGTCGAGAGCTTATCACAGGAAAAAGTCCGTCAGAGAGTTTGGAGATCAATTTCAGGGTGAGCTCTGGTTTGGTGGAAATAGTTCGGCAGATATCTATTAAACCTCGTTATATTCTTGCCAAGGGGGGAATCACCTCATCAGATCTTGCTACGAAAGCACTTGAAGCAAAATGTGCAAAAATAGTTGGACAAGCTCTGCCTGGTGTTCCCTTATGGCTGCTTGGTCCTGAAAGCAGACATCCAGGAGTGCCATACATTGTTTTTCCTGGGAATGTTGGCGATAGTAAAGCTCTAGCTGAACTTGTCAGTTCTTGGGCTCGTCCGGCAAGAATTTCCTCGACAAAAGACATCCTTCTTAATGCAGATAAGGGTGGATATGCAGTAGGAGCATTCAATGTTTATAATCTAGAAGCAGTTGAGGCAGTTGTTGCTGCAGCAGAGGAAGAATTAAGTCCTGCCATTTTACAGATCCATCCAGGTGCTTTAAAGCTGGGAGGGTATCCCTTGGTTGTCTGTTGCATTTCTGCTGCTGAACGAGCCAAAGTTCCTATTACTGTACACTTTGATCATGGAACTTCACGAAAAGATCTTTTGGAAGCTCTTGAATTGGGCTTTGACTCAGTCATGGTAGATGGTTCGCATCTTTACTTCGAGGAGAATGTTGCCTACACAAAGTTTATATCATCCCTTGCTCATTCAAATGGCATGTTGGTCGAAGCTGAACTTGGGAGATTGTCTGGGACGGAAGATGATTTGACTGTTGAAGATTATGAAGCTAAACTGACTGATATTAATAAGGATCTACATGCTTTGTGTTCAAAGAAAGGAGTTTTTGTGGTGCTTCATGGAGCCTCTGGATTGTCTCGGGATCTAATCAAGGAATGCATCGAGCGGGGTGTGACAAAATTCAATGTAAACACAGAAGTACGAAAGGCATATATGGATTCTTTGAGTTCGCCAAGCAAAGATCTTGTCGATGCTATGACTGCAGCCAAGCAAGCCATGAAAGCTGTCATTGCAGAGAAGATGCACCTGTTTGGTTCAGCAGGAAAAGCATAA 2403 43.24 MFENRVPHMLDNDYTPYSALDIFVKDLGIVSRECASLKVPLPISTVAHQLFLSGSAAGWGRQDDAGVVKVYETLTGVKVAGEPPILKKEVVLKSLHPEWPEDPIPEIQILNEKSIKTLVVLDDDPTGTQTVHDIEVLTEWSVESLIEQFRKSPKCFFILTNSRSLSSRKASLLIEEICKNIRIASESVRNADFTVVLRGDSTLRGHFPEEPDAAVSVLGEMDAWIICPFFYQGGRYTIDDIHYVADSDKLVPAGETEFAKDASFGFKSSNLCEWVEEKTAGRIQANTVSSISIQLLRKGGPEAVCEHLCNLQKGMVCIVNAASERDMAVFAAGMIKAELKGKRFLCRTAASFVSARVGIIPRAPLLPKDVGIDKERNGGLIVVGSYVPKTTKQVEELQLLCSSFIRSIEVSVTRLAMSSPEERDEEIRKTAEMADVLLGTQKETLIMTSRELITGKSPSESLEINFRVSSGLVEIVRQISIKPRYILAKGGITSSDLATKALEAKCAKIVGQALPGVPLWLLGPESRHPGVPYIVFPGNVGDSKALAELVSSWARPARISSTKDILLNADKGGYAVGAFNVYNLEAVEAVVAAAEEELSPAILQIHPGALKLGGYPLVVCCISAAERAKVPITVHFDHGTSRKDLLEALELGFDSVMVDGSHLYFEENVAYTKFISSLAHSNGMLVEAELGRLSGTEDDLTVEDYEAKLTDINKDLHALCSKKGVFVVLHGASGLSRDLIKECIERGVTKFNVNTEVRKAYMDSLSSPSKDLVDAMTAAKQAMKAVIAEKMHLFGSAGKA 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11472712 11485436 - Bda024155.1 Bda06g00824 8406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00824 800 Pfam Fructose-bisphosphate aldolase class-II 561 712 IPR000771 GO:0005975|GO:0008270|GO:0016832
Bda06g00824 800 Pfam Fructose-bisphosphate aldolase class-II 714 799 IPR000771 GO:0005975|GO:0008270|GO:0016832
Bda06g00824 800 SUPERFAMILY Aldolase 561 800 - -
Bda06g00824 800 Gene3D Aldolase class I 713 800 IPR013785 -
Bda06g00824 800 PANTHER ALDOLASE-RELATED 2 714 - -
Bda06g00824 800 Pfam Sugar-binding N-terminal domain 118 355 IPR010737 -
Bda06g00824 800 Gene3D - 117 356 IPR037051 -
Bda06g00824 800 Gene3D - 370 552 IPR042213 -
Bda06g00824 800 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 1 71 IPR029154 GO:0051287
Bda06g00824 800 SUPERFAMILY YgbK-like 118 550 - -
Bda06g00824 800 Coils Coil 702 722 - -
Bda06g00824 800 Pfam Nucleotide-binding C-terminal domain 380 546 IPR031475 -
Bda06g00824 800 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 1 78 IPR008927 -
Bda06g00824 800 Gene3D Aldolase class I 554 712 IPR013785 -
Bda06g00824 800 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 2 714 - -
Bda06g00824 800 Gene3D - 1 80 IPR013328 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00824 - - - zju:107418532 1275.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00824 Bda_Chr06 FPKM 1.470149 1.71029 5.905225 4.651534 7.055484 6.293551 8.322287 1.960153 1.666426