Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00835 ATGGAGGGAAGAGGTCTGAGCTTCCTCTGTTCTACTCATGGCTCTTATCGCATTCTGCCATCCGTCGCCTCCTCCTCAACTTCTGTAGGTTGCCTCATCAAAGCTGAGGTCCATGAAGTTAGAGTTTGCACCAACCGCACTTGCCGAAAACAAGGTTCTCTCCAAGTCCTCGAAACTCTCGCCGGTCTGGTTTCCCCTTCTCTCTCCCTCAAGTCCTGCGGCTGCTTGGGCCGGTGCGGCGCTGGTCCTAATATCGTCCTTCTTCCCGACGGCGTTATTGTCAGCCATTGCGGTACTGCTGCTCGAACTGCCGAGGTCTTGTTCGGGTTGTGTCGCGGAGATGGAGCAACGTCTGATCGTGATGAGCCGGCCAAGAGTTTGGAAGCTCTTGCGTTGAGAAAGAGGGCCGAGAGTGAGCTGGAGAAGAGGAATTTCTCGGACGCTGAGCTGCTCCTTTCACAGGCTATAGAATTAAATCCTTTTGGCGGCATCCATATCATTCGTAAGGACAGGTCTGTTGCTAGGCTAGGATTGAGAGATTATTCTGGGGCTCTTGAAGATGCCAGAGAAGCTGCAGCATTAGCCCCTAATTATCCTGAGGCTTATATTTGTGAAGGTGATGCGTATTTGGCTATGGATCATCTTGATTTGGCAGAGAAGTCGTACCTAACAGCTTTACAGATAGATCCTTCAATTCGTCGTTCAAAATCATTCAAGGTATCAACTAACAATGGAATTTCTTCAATGAAAACAATTGATTTTGATTTACCCTCTAATTTACTTCTTTTAGTTGGAGTTGCATAA 804 48.01 MEGRGLSFLCSTHGSYRILPSVASSSTSVGCLIKAEVHEVRVCTNRTCRKQGSLQVLETLAGLVSPSLSLKSCGCLGRCGAGPNIVLLPDGVIVSHCGTAARTAEVLFGLCRGDGATSDRDEPAKSLEALALRKRAESELEKRNFSDAELLLSQAIELNPFGGIHIIRKDRSVARLGLRDYSGALEDAREAAALAPNYPEAYICEGDAYLAMDHLDLAEKSYLTALQIDPSIRRSKSFKVSTNNGISSMKTIDFDLPSNLLLLVGVA 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11584710 11586837 - Bda024168.1 Bda06g00835 8417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00835 267 CDD TRX_Fd_family 38 107 - -
Bda06g00835 267 Gene3D Tetratricopeptide repeat domain 115 238 IPR011990 GO:0005515
Bda06g00835 267 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 34 243 - -
Bda06g00835 267 SMART tpr_5 129 162 IPR019734 GO:0005515
Bda06g00835 267 SMART tpr_5 199 232 IPR019734 GO:0005515
Bda06g00835 267 SMART tpr_5 165 198 IPR019734 GO:0005515
Bda06g00835 267 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Bda06g00835 267 SUPERFAMILY Thioredoxin-like 38 114 IPR036249 -
Bda06g00835 267 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Bda06g00835 267 Pfam Tetratricopeptide repeat 199 231 IPR013105 -
Bda06g00835 267 Gene3D Glutaredoxin 35 114 - -
Bda06g00835 267 SUPERFAMILY TPR-like 129 232 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00835 - - - cit:102629155 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00835 Bda-Chr6:11584710 Bda08g00561 Bda-Chr8:5705007 2.12E-07 dispersed
Bda06g00835 Bda-Chr6:11584710 Bda06g00045 Bda-Chr6:464308 4.13E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g975 . . Bda06g00835 . . . . . . . . . . . . Cpe20g00046 . . . . . . . . . . . . . . . . . . . Lsi02g00036 . Chy12g01572 Cme12g02030 . Blo15g00048 . . . . . . . . . Cma13g01107 . Car13g00940 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012828 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00835 Bda_Chr06 FPKM 30.688511 33.907673 24.017216 25.025661 19.331526 19.605709 18.503906 10.631613 10.148221