Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00840 ATGATACCCAATAGCTCTTCCTCCGCTCTCCCTTCTTCTGAACCATTTTCTTGCATTGAAAATGGAGTTCTTAACAAGAGGAAGAGAAGACCGGCTGGAACCCCAGATCCAGATGCAGATGTAGTATCGCTTTCGCCAAAAACATTGCTTGAATCCGATCGATATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGAGATCAGAATCTGCAAATGCATCGCCGGAGACACAAAGTGCCATGGAAATTGCTGAAGAGGGAGTCGCCGGCGGGGAGGAAGAGAGTGTTTGTTTGTCCGGAGCCGAGCTGTCTGCACCACGACCCTTGTCACGCCCTCGGAGATCTCGTCGGAATAAAGAAGCATTTCCGGCGAAAGCACAGCAATCACAAGCAATGGGTTTGTGAAAAATGTTCAAAAGGATATGCAGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGCCGAGTTTTCTCAAGGTTGGTGGAGAGCTTCATAGAACACCAAGATGCTTGCAAAATGGGTCGTCTTCCACAGGAATTGCAGACTCCTCAGCCAGCATGCTTGTCTAGAACAGCTTCAAGTCTCAGCCCATCAAGCGATACCAACTTTGCAGGAGCTCAAATATGGCCATCAATGGCTGCTCATCAGCAAAAAGACTCCATCTTCTCCCTTCACTCCAAAGAAAGCACCTCCAAAAAAGATGTTCATGCTTACTATCACAACCTGGATCTTCAGCTCTCTACCACCTCCTCAAATCCAACAGATATTTCTCCGAAGAAAGACGAGAGGCGTTCTACCCATTTGCAGCTCTCGATTGGTTCTTCCGATGGCAGCGAGAAGGTCGAATCCAACACCGTGAACAACTATGAAAAATCCGGGTTCTTCTCAGTTTCGAAGAATATGAAAGAAGAAGAGCAGCTGAGGATAGTAATGGCGGAAAAGGCATTTGCAGAAGAAGCGAGAAAGCAAGCGAAGAGACAGATTGAATTAGCAGAAGAAGAATTTGCAAGTGCAAAGAGAATGAGACAGCAAGCACAGATTGAGCTGGGAAAAGCTCAAGCTTTGAAAGAACATTCGATCAAGAAGATGAACTCCACTCTTCTGCAAATCACTTGCCAAGCTTGTCAAAGAAGATTTCAATCCAGAAAAACAGTTTTACCATCTTCAGATTATGAAAATTCACTGGTTTTGAGATACATTTCTTCAGTAATCACATCAGAAGGTGACCAGCTAGAAAACTATAAACGACTGAACCCATGA 1290 44.73 MIPNSSSSALPSSEPFSCIENGVLNKRKRRPAGTPDPDADVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPAGRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRLVESFIEHQDACKMGRLPQELQTPQPACLSRTASSLSPSSDTNFAGAQIWPSMAAHQQKDSIFSLHSKESTSKKDVHAYYHNLDLQLSTTSSNPTDISPKKDERRSTHLQLSIGSSDGSEKVESNTVNNYEKSGFFSVSKNMKEEEQLRIVMAEKAFAEEARKQAKRQIELAEEEFASAKRMRQQAQIELGKAQALKEHSIKKMNSTLLQITCQACQRRFQSRKTVLPSSDYENSLVLRYISSVITSEGDQLENYKRLNP 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11647348 11649338 + Bda024176.1 Bda06g00840 8422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00840 429 MobiDBLite consensus disorder prediction 257 294 - -
Bda06g00840 429 SUPERFAMILY beta-beta-alpha zinc fingers 54 152 IPR036236 -
Bda06g00840 429 Coils Coil 317 358 - -
Bda06g00840 429 PANTHER OS03G0310200 PROTEIN 10 417 IPR039288 GO:0009630
Bda06g00840 429 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Bda06g00840 429 Pfam Zinc-finger of C2H2 type 55 73 - -
Bda06g00840 429 Gene3D Classic Zinc Finger 43 129 - -
Bda06g00840 429 SMART c2h2final6 132 159 IPR013087 -
Bda06g00840 429 SMART c2h2final6 55 77 IPR013087 -
Bda06g00840 429 SMART c2h2final6 96 126 IPR013087 -
Bda06g00840 429 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 10 417 - -
Bda06g00840 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Bda06g00840 429 MobiDBLite consensus disorder prediction 278 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01773 Bda-Chr1:53969933 Bda06g00840 Bda-Chr6:11647348 9.40E-170 dispersed
Bda06g00726 Bda-Chr6:9938173 Bda06g00840 Bda-Chr6:11647348 4.61E-17 dispersed
Bda06g00840 Bda-Chr6:11647348 Bda06g00859 Bda-Chr6:11818447 0 dispersed
Bda15g00674 Bda-Chr15:10194150 Bda06g00840 Bda-Chr6:11647348 1.55E-16 dispersed
Bda06g00840 Bda-Chr6:11647348 Bda10g00123 Bda-Chr10:3211502 5.98E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16037 PF12874 zf-met 0.024 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00840 K25871 - qsu:112038406 570.081