Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda06g00840 | ATGATACCCAATAGCTCTTCCTCCGCTCTCCCTTCTTCTGAACCATTTTCTTGCATTGAAAATGGAGTTCTTAACAAGAGGAAGAGAAGACCGGCTGGAACCCCAGATCCAGATGCAGATGTAGTATCGCTTTCGCCAAAAACATTGCTTGAATCCGATCGATATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGAGATCAGAATCTGCAAATGCATCGCCGGAGACACAAAGTGCCATGGAAATTGCTGAAGAGGGAGTCGCCGGCGGGGAGGAAGAGAGTGTTTGTTTGTCCGGAGCCGAGCTGTCTGCACCACGACCCTTGTCACGCCCTCGGAGATCTCGTCGGAATAAAGAAGCATTTCCGGCGAAAGCACAGCAATCACAAGCAATGGGTTTGTGAAAAATGTTCAAAAGGATATGCAGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGCCGAGTTTTCTCAAGGTTGGTGGAGAGCTTCATAGAACACCAAGATGCTTGCAAAATGGGTCGTCTTCCACAGGAATTGCAGACTCCTCAGCCAGCATGCTTGTCTAGAACAGCTTCAAGTCTCAGCCCATCAAGCGATACCAACTTTGCAGGAGCTCAAATATGGCCATCAATGGCTGCTCATCAGCAAAAAGACTCCATCTTCTCCCTTCACTCCAAAGAAAGCACCTCCAAAAAAGATGTTCATGCTTACTATCACAACCTGGATCTTCAGCTCTCTACCACCTCCTCAAATCCAACAGATATTTCTCCGAAGAAAGACGAGAGGCGTTCTACCCATTTGCAGCTCTCGATTGGTTCTTCCGATGGCAGCGAGAAGGTCGAATCCAACACCGTGAACAACTATGAAAAATCCGGGTTCTTCTCAGTTTCGAAGAATATGAAAGAAGAAGAGCAGCTGAGGATAGTAATGGCGGAAAAGGCATTTGCAGAAGAAGCGAGAAAGCAAGCGAAGAGACAGATTGAATTAGCAGAAGAAGAATTTGCAAGTGCAAAGAGAATGAGACAGCAAGCACAGATTGAGCTGGGAAAAGCTCAAGCTTTGAAAGAACATTCGATCAAGAAGATGAACTCCACTCTTCTGCAAATCACTTGCCAAGCTTGTCAAAGAAGATTTCAATCCAGAAAAACAGTTTTACCATCTTCAGATTATGAAAATTCACTGGTTTTGAGATACATTTCTTCAGTAATCACATCAGAAGGTGACCAGCTAGAAAACTATAAACGACTGAACCCATGA | 1290 | 44.73 | MIPNSSSSALPSSEPFSCIENGVLNKRKRRPAGTPDPDADVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPAGRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRLVESFIEHQDACKMGRLPQELQTPQPACLSRTASSLSPSSDTNFAGAQIWPSMAAHQQKDSIFSLHSKESTSKKDVHAYYHNLDLQLSTTSSNPTDISPKKDERRSTHLQLSIGSSDGSEKVESNTVNNYEKSGFFSVSKNMKEEEQLRIVMAEKAFAEEARKQAKRQIELAEEEFASAKRMRQQAQIELGKAQALKEHSIKKMNSTLLQITCQACQRRFQSRKTVLPSSDYENSLVLRYISSVITSEGDQLENYKRLNP | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11647348 | 11649338 | + | Bda024176.1 | Bda06g00840 | 8422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda06g00840 | 429 | MobiDBLite | consensus disorder prediction | 257 | 294 | - | - | |
Bda06g00840 | 429 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 152 | IPR036236 | - | |
Bda06g00840 | 429 | Coils | Coil | 317 | 358 | - | - | |
Bda06g00840 | 429 | PANTHER | OS03G0310200 PROTEIN | 10 | 417 | IPR039288 | GO:0009630 | |
Bda06g00840 | 429 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 57 | 77 | IPR013087 | - | |
Bda06g00840 | 429 | Pfam | Zinc-finger of C2H2 type | 55 | 73 | - | - | |
Bda06g00840 | 429 | Gene3D | Classic Zinc Finger | 43 | 129 | - | - | |
Bda06g00840 | 429 | SMART | c2h2final6 | 132 | 159 | IPR013087 | - | |
Bda06g00840 | 429 | SMART | c2h2final6 | 55 | 77 | IPR013087 | - | |
Bda06g00840 | 429 | SMART | c2h2final6 | 96 | 126 | IPR013087 | - | |
Bda06g00840 | 429 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 10 | 417 | - | - | |
Bda06g00840 | 429 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 55 | 77 | IPR013087 | - | |
Bda06g00840 | 429 | MobiDBLite | consensus disorder prediction | 278 | 294 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01773 | Bda-Chr1:53969933 | Bda06g00840 | Bda-Chr6:11647348 | 9.40E-170 | dispersed | |
Bda06g00726 | Bda-Chr6:9938173 | Bda06g00840 | Bda-Chr6:11647348 | 4.61E-17 | dispersed | |
Bda06g00840 | Bda-Chr6:11647348 | Bda06g00859 | Bda-Chr6:11818447 | 0 | dispersed | |
Bda15g00674 | Bda-Chr15:10194150 | Bda06g00840 | Bda-Chr6:11647348 | 1.55E-16 | dispersed | |
Bda06g00840 | Bda-Chr6:11647348 | Bda10g00123 | Bda-Chr10:3211502 | 5.98E-70 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16037 | PF12874 | zf-met | 0.024 | CL0361 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda06g00840 | K25871 | - | qsu:112038406 | 570.081 |