Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00848 ATGGTGAGAAAGAAGAGAAGTGAGGGTGAGAGCTCGGAGTCCCAGGAAGCTAGTGGGAGTGGTGGCCGTGGTGGTCCTCAACGTCATGGAGAAAGGGGTGGCCCATCCCAACAGCAACAAGGGTCAAGGGGCTGGGGTCCTCAAGGTGGTCGAGGAGGTCCACATGGTGGTGCTGGTGGTGGAGGGCGAGGCCGGGGAATGCCTCCACAGCAACAACAGTATGAATACCAAGGAAGAGGTAGGGGGGGTCCGCCTCAACAAGGAGGTGGACGCGGTGGCTTTCGTGGTGGCCTTGCTGGAGGACCGCCTCCTTCAGGTGAGCCATCCAGACCACCTGTTTCCGAGCTGCACCAAGCTACCTCGGCTCCATATCAAGTTGGGGTGTCTCATTACACACCAGATATCGGAAGTTCTTCTAGGCTGCCTGAAGTACCCAGGATGGAGCAACAGTTCGAGCACTTGTCCGTTCAGGAGGAAGGTGCTTCTAGTCAAGCCATTCAACCGGTGCCACCCTCAAGCAAGTCAATGAGGTTTCCACTTCGTCCTGGAAAAGGTAGCGCTGGCATAAGTTGTATTGTGAAGGCCAATCACTTTTTTGCCGAACTACCTGACAAAGATCTTCATCAGTATGATGTTACAATTATACCAGAGGTGACTTCACGGGGTGTAAACCGTGCTGTAATGGATCAGTTAGTGAGATCTTACCGAGAATCTCATCTGGGTAGAAGGCTTCCAGCTTATGATGGTAGGAAAAGTCTGTATACCGCCGGCCCTCTTCCCTTTTCGTCAAAGGAATTTAAAATCACTCTCCTGGATGAAGATGATGGATCGGGTTCACAAAGGAGGGAGAGAGAATTTAGGGTTGTGATCAAATTTGCTGCACGAGCTGACCTACATCATTTAGGACTCTTTTTGCAAGGCAGGCAAGCAGATGCTCCTCAAGAAGCCCTTCAGGTTCTGGACATTGTCCTCCGTGAACTGCCTACTGCTAGATATTGTCCTGTTGGTCGATCCTTTTATGCTCCTGGTCTGGGAAGCCGTCAGTCACTGGGCGAGGGATTGGAAAGTTGGCGCGGCTTTTATCAAAGTATTCGTCCGACACAAATGGGACTCTCCCTCAATATTGATATGTCTTCTACTGCTTTCATTGAGCCATTGCCAGTCATTGAATTTGTGACACAGCTATTGAACCGAGATGTGTCAGCGCGAACATTGTCCGATGCTGATCGCGTCAAGATAAAGAAAGCTCTACGGGGAGTTAAGGTCGAAGTCACTCACCGAGGGAATATGCGAAGAAAGTATCGTATTTCTGGTCTAACATCACAGGCAACACGGGAACTCACTTTCCCAGTTGATGAGATTGGAACGATGAAATCTGTTGTTGAATATTTTTATGAAACCTATGGTTTTGTAATACAACATACGCAGTGGCCTTGCCTGCAAGTGGGGAACCAACAGAGACCTAATTATTTGCCGATGGAGGTGTGTAAGATTGTTGAGGGACAGAGGTACTCAAAAAGGCTAAATGAAAAACAGATAACTGCACTGCTGAAAGTCACCTGCCAGCGTCCTAAAGATAGGGAGAAAGACATTCTGCTGACTGTTAGGCATAATGCATATGATGATGACCCATATGCTAAAGAGTTTGGGATTAAGATCAGTGATAAACTTGCTTCTGTTGAAGCTCGTATTCTTCCTGCCCCTTGGCTCAAATATCATGAAACTGGTAGGGAAAAGGATTGTTTACCACAAGTTGGGCAATGGAACATGATGAATAAGTTAGATTTTAAAATGGTTAATGGTGGTACGGTGAACCATTGGATCTGCATCAATTTTTCTCGTCATGTACAAGATAGTGTTGCCCGGGGATTCTGCTTTGAACTTGCTCAAATGTGTTATACTTCTGGAATGGCTTACAATCCAGAACCTGTACTTCCTGTGCTTAGTGCTCGTCCTGATCAAGTAGAGAAGGTTCTTAAAACTCGGTATCATGATGCCATGACGCAACTTCAGCCCCATGGCAAAGAGCTTGATTTGCTTATTGTCATTCTGCCAGATAATAATGGGTTTCTTTATGGTGATTTGAAGCGTATTTGTGAGACAGATCTCGGTCTTGTTTCACAATGCTGTTTGACAAAGCATGTATTTAAAATGAGTAAGCAATATTTAGCGAATGTTGCTTTGAAGATTAATGTAAAAGTTGGGGGAAGGAACACAGTGCTTGTTGATGCAATATCAAGGCGGATTCCTTTGGTTAGCGATAGACCTACCATCATTTTTGGTGCTGATGTTACTCATCCTCACCCAGGGGAGGATTCTAGTCCCTCTATCGCCGCTGTTGTGGCTTCCCAAGATTGGCCTGAAGTTACGAAGTATGCTGGTTTGGTTTCAGCCCAGGCGCACCGACAAGAGCTCATCCAAGATCTGTTTAAACAATGGCAGGATCCTGTGAGAGGAACCGTATCTGGAGGAATGATCAAGGAACTTCTCATATCATTTCGAAGAGCAACTGGGCAGAAACCTCAACGAATAATCTTCTACAGGTTTAGTTCTATTCACACACTATTTTGCAGGGATGGTGTTAGTGAAGGACAGTTCTATCAGGTTTTGCTGCATGAACTTGATGCCATTCGGAAGGCTTGTAATTCATTGGAGCCAAATTATCAACCTCCAGTTACATTTGTTGTAGTTCAGAAGCGGCACCACACACGGTTATTTGCTAACAACCATAATGATCGCAATGCAGTTGACCGGAGCGGTAACATATTACCTGGGACGGTCGTGGACTCCAAAATCTGTCATCCTACTGAATTTGACTTCTACCTCTGTAGTCATGCTGGAATACAGGGAACTAGCCGCCCAGCTCATTACCACGTTCTGTGGGATGAGAACAAGTTTACGGCTGATGGATTGCAGTCCCTCACGAATAATCTTTGCTACACATATGCCAGGTGTACCCGGTCTGTGTCCATTGTTCCTCCAGCATATTATGCCCACCTTGCTGCATTCAGAGCAAGGTTCTACATGGAGCCAGAGACGTCGGACAGTGGATCAATGACTAGTGGAGCGGCTGCTGGACGTGGTGGGATGGGTGGAGCTGGGGCTGGTGGTCGAGGCACTCGGGCACCTGGTGCAGTTGCCGTGAGACCTTTGCCTGCACTGAAAGAGAATGTTAAGAGAGTCATGTTTTACTGCTAA 3198 46.97 MVRKKRSEGESSESQEASGSGGRGGPQRHGERGGPSQQQQGSRGWGPQGGRGGPHGGAGGGGRGRGMPPQQQQYEYQGRGRGGPPQQGGGRGGFRGGLAGGPPPSGEPSRPPVSELHQATSAPYQVGVSHYTPDIGSSSRLPEVPRMEQQFEHLSVQEEGASSQAIQPVPPSSKSMRFPLRPGKGSAGISCIVKANHFFAELPDKDLHQYDVTIIPEVTSRGVNRAVMDQLVRSYRESHLGRRLPAYDGRKSLYTAGPLPFSSKEFKITLLDEDDGSGSQRREREFRVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTARYCPVGRSFYAPGLGSRQSLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSARTLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDEIGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPKDREKDILLTVRHNAYDDDPYAKEFGIKISDKLASVEARILPAPWLKYHETGREKDCLPQVGQWNMMNKLDFKMVNGGTVNHWICINFSRHVQDSVARGFCFELAQMCYTSGMAYNPEPVLPVLSARPDQVEKVLKTRYHDAMTQLQPHGKELDLLIVILPDNNGFLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKQWQDPVRGTVSGGMIKELLISFRRATGQKPQRIIFYRFSSIHTLFCRDGVSEGQFYQVLLHELDAIRKACNSLEPNYQPPVTFVVVQKRHHTRLFANNHNDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAGRGGMGGAGAGGRGTRAPGAVAVRPLPALKENVKRVMFYC 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11735586 11741394 - Bda024185.1 Bda06g00848 8430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00848 1065 SUPERFAMILY Ribonuclease H-like 666 1010 IPR012337 -
Bda06g00848 1065 CDD PAZ_argonaute_like 385 499 - -
Bda06g00848 1065 Gene3D paz domain 379 504 - -
Bda06g00848 1065 PANTHER PROTEIN ARGONAUTE 1A 77 1064 - -
Bda06g00848 1065 ProSiteProfiles Piwi domain profile. 679 1010 IPR003165 GO:0003676
Bda06g00848 1065 SMART PAZ_2_a_3 390 522 IPR003100 GO:0005515
Bda06g00848 1065 Pfam PAZ domain 390 516 IPR003100 GO:0005515
Bda06g00848 1065 Pfam Argonaute linker 2 domain 526 572 IPR032472 -
Bda06g00848 1065 SMART Piwi_a_2 679 1010 IPR003165 GO:0003676
Bda06g00848 1065 Pfam N-terminal domain of argonaute 191 324 IPR032474 -
Bda06g00848 1065 Gene3D - 564 742 - -
Bda06g00848 1065 Gene3D - 748 1065 IPR036397 GO:0003676
Bda06g00848 1065 SUPERFAMILY PAZ domain 193 529 IPR036085 GO:0005515
Bda06g00848 1065 MobiDBLite consensus disorder prediction 1018 1041 - -
Bda06g00848 1065 ProSiteProfiles PAZ domain profile. 386 500 IPR003100 GO:0005515
Bda06g00848 1065 Pfam Glycine-rich region of argonaut 72 171 IPR024357 -
Bda06g00848 1065 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 77 1064 - -
Bda06g00848 1065 MobiDBLite consensus disorder prediction 1 117 - -
Bda06g00848 1065 Pfam Piwi domain 680 1009 IPR003165 GO:0003676
Bda06g00848 1065 Pfam Argonaute linker 1 domain 334 384 IPR014811 -
Bda06g00848 1065 SMART DUF1785_2 333 385 IPR014811 -
Bda06g00848 1065 CDD Piwi_ago-like 544 1009 IPR045246 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00848 Bda-Chr6:11735586 Bda11g00601 Bda-Chr11:6125664 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00848 K11593 - rcu:8275074 1668.29