Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00852 ATGAAGAACACTGGCTCAAGAACTCACGGTTGGCTTAATCAGGAATCTCCAATAGTAGTTGGTGCTGCCGTAGCAGCCGCAGCCTTGGGAGGAAAATACTTGATTGGAGCTTGGCAAGTGTTCAAAACTGGCCTGTCTTCTCCCCGAGCTCGAAGATTCTACAACGGAGGATTTGAACAAGTCATGAGCAAGCGAGAAGCGGCCTTAATTCTCGGCATTCGGGAAGGTGCAGTGATGGAGAAGATAAAGGAAGCTCATAGGAAAGTAATGGTGGCAAATCACCCGGATGCAGGTGGCAGTCATTATCTTGCTTCCAAGATAAACGAAGCTAAGGACATGTTGGTGGGAAGAAGATCAACTCCCTCTCCCTTCTAA 375 48.0 MKNTGSRTHGWLNQESPIVVGAAVAAAALGGKYLIGAWQVFKTGLSSPRARRFYNGGFEQVMSKREAALILGIREGAVMEKIKEAHRKVMVANHPDAGGSHYLASKINEAKDMLVGRRSTPSPF 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11772938 11773496 + Bda024189.1 Bda06g00852 8434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00852 124 Gene3D DnaJ domain 52 117 IPR036869 -
Bda06g00852 124 PANTHER UNCHARACTERIZED 15 119 - -
Bda06g00852 124 SUPERFAMILY Chaperone J-domain 56 116 IPR036869 -
Bda06g00852 124 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM14-3-LIKE 15 119 - -
Bda06g00852 124 CDD DnaJ 70 114 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00852 K09539 DNAJC19; DnaJ homolog subfamily C member 19 - qsu:112012081 166.392
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00852 Bda-Chr6:11772938 Bda15g00179 Bda-Chr15:4382500 2.13E-38 dispersed
Bda06g00852 Bda-Chr6:11772938 Bda03g00749 Bda-Chr3:6332026 1.56E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g996 . . Bda06g00852 . . . . Bma12g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo15g00034 . . Bpe07g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002486 3 2 1 4 3 2 1 2 1 2 1 2 2 2 2 1 2 3 2 1 2 2 2 2 2 1 2 3 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00852 Bda_Chr06 FPKM 19.008333 18.504463 14.160139 10.021638 9.909216 10.846805 10.573245 12.074355 14.038414