Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00854 ATGGTGCTGACGACGACCTCGTCTTACTCTGATGATGGTATGAACTCCACCTTTGCTTCCAGATACGTCAGAATTCCTCTCCCGAAATTCAAGATGGGGGAAAATCAAATACCAAAAGAAGCGGCATATCAAATAATAAACGACGAGTTGATGTTGGATGGAGCGCCGAGATTAAACCTCGCCTCTTTTGTGACCACTTGGATGGAGCCAGAGTGCGACAAGCTGATCATGGCTTCTATGAACAAGAACTACGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGTTGCGTGAATATTATTGCCAACCTATTTAATGCACCTGTTAAAGAAGATGAAGCTGCAGTCGGAGTGGGTACTGTAGGTTCATCAGAGGCAATAATGCTGGCTGGCCTTGCTTTTAAAAGGAAATGGCAGCAAAAGAGAAAATCAGAAGGCCGACCATTTGATAAACCCAACATAGTATGCTGGGAGAAGTTTGCAAGGTACTTCGAGGTGGAGCTGAAGGAGGTCAAACTGTCTGAAGGATTTTACGTTATGGACCCTGTAAAAGCAGTTGAAATGGTGGATGAAAACACCATCTGCGTTGCAGCTATTCTGGGCTCGACACTGACCGGAGAGTTTGAAGACGTTAAACTTCTTAACGAGCTTCTTACTATGAAGAACAAGGAGACAGGATGGGACACCCCAATTCACGTTGATGCTGCTAGTGGAGGATTTATAGCTCCATTTCTTTACCCTGAGCTCGAGTGGGATTTTCGATTGCCATTAGTGAAGAGTATTAATGTCAGTGGCCACAAGTATGGCCTTGTCTACCCTGGTGTTGGTTGGGTTGTGTGGAGAAGTAAAGAAGACTTGCCAGAAGAACTTATATTTCATATTAACTATCTTGGATCTGATCAACCCACTTTCACCCTCAACTTCTCCAAAGGCTCTAGCCAGATTATTGCTCAGTATTATCAGTTCATAAGGCTCGGATTTGAGGGTTACAAGAACATTATGAAGAACTGCATAGAAAATTCAAGAGTTTTGAAAGAAGGAATAGAAAAAATGGGAAAATTCACAATTCTCTCCAAAGATGTTGGAGTTCCTCTTGTCGCTTTCTCTCTGAAAGACAGTAAAAACTACACAGTATTTGACATAGCAGAGAGTTTGAGAAGGTACGGGTGGATTGTACCGGCGTATACGATGCCACCAAATGCTGAGAACATAGCTGTTCTAAGAGTGGTGATAAGGGAGGACTTCAGCTGTGGCTTGGCGGATAGGCTCATATCAGACATTGAGAAAGTTTTGAAGGAACTGGGAGGGCCGTCTAGCCGGATGTCTATAAAATCAGCTCATTTTGAAGCCAATGTTGATGAAGCAGAGAAGGGAGAAGAAGGTGGTTCAGAGACCGTTAAAAAGAGTGTGAAAGAGATTGAGAAGGAGGTTTTTACTTACTGGAAGAGGGTTGTGGATGGAAAGAGAACTGGGGTCTGCTAA 1491 43.66 MVLTTTSSYSDDGMNSTFASRYVRIPLPKFKMGENQIPKEAAYQIINDELMLDGAPRLNLASFVTTWMEPECDKLIMASMNKNYVDMDEYPVTTELQNRCVNIIANLFNAPVKEDEAAVGVGTVGSSEAIMLAGLAFKRKWQQKRKSEGRPFDKPNIVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTMKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELIFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMKNCIENSRVLKEGIEKMGKFTILSKDVGVPLVAFSLKDSKNYTVFDIAESLRRYGWIVPAYTMPPNAENIAVLRVVIREDFSCGLADRLISDIEKVLKELGGPSSRMSIKSAHFEANVDEAEKGEEGGSETVKKSVKEIEKEVFTYWKRVVDGKRTGVC 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11778423 11782185 + Bda024191.1 Bda06g00854 8436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00854 496 Gene3D - 354 439 - -
Bda06g00854 496 Gene3D - 66 353 IPR015421 GO:0003824
Bda06g00854 496 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 374 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bda06g00854 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 - -
Bda06g00854 496 CDD DOPA_deC_like 59 432 - -
Bda06g00854 496 Gene3D - 1 65 - -
Bda06g00854 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bda06g00854 496 SUPERFAMILY PLP-dependent transferases 14 437 IPR015424 -
Bda06g00854 496 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 437 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00854 Bda-Chr6:11778423 Bda12g00270 Bda-Chr12:2905253 0 dispersed
Bda06g00854 Bda-Chr6:11778423 Bda12g00269 Bda-Chr12:2872967 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00854 K01580 - qsu:112038575 814.298