Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00866 ATGAACAAGGGACCTGGGGCAGAAGAGAAGTTCAAAGAGATTAGTGCTGCATACGAGGTCCTGTCTGATGATGAGAAAAGATCTTTATATGATCAATTTGGTGAGGCCGGTCTGCAAGGAGAATATGGGGGATCCACCAGTGGTTCACAAGGGGTGGATCCTTATGAAGTTTTTGATACATTCTTTGGCGGAGGAAATGGCCTTTTTGGAGCAAGAGTTGAAACTGGAGGCTTCAATATGAATATGAGTAACAAGGAATCCCAGAATCTTGATATTAGGTACGACCTGCATCTGAGCTTTGAAGAATCAGTTTTTGGTGGAGAGAGGGAAGTTGAAATTTCTTACTTGGGGCCATGTGAAACTTGTGACGGAACAGGTGCTAAATCAAGTAGTTCAATTAAATCTTGTTCTAGCTGTCGCGGGAGAGGGGCTGCCATGAAAACTCAGAAAACACCCTTTGGAATAATGTCCCAGGTATCTACTTGCCCAAACTGTGGGGGTGATGGTAAAATAATCACGGAACATTGTCGCAATTGTGGTGGCAATGGCCAACTAAAATTTAAACGAAAAATGAACGTGGTTATCCCAGCGGGAGTTAACGATGGAGCCACGATGCAAATTCAAAGAGAGGGAAGTTTTGACAAGAAAAGGGGAATAGTTGGAGACCTCTATATAGTGCTTCATGTTGAAGAGAAGAGTGGATTTCAGAGGGACGGTCTTAACTTATACTCAAAGATTGACATTGATTATATAGAAGCAATACTAGGGAGCGTGGTAAAGGTAGAGACTGTTGACGGCGTGAAAGATCTACAAATCCCTCCCGGGATTCAGCCTGGGGATACAGTGAAATTGTCACGCATGGGGGTTCCAGACATAAATAAACCTTCTGTACGTGGTGATCATCATTTCATTGTCAATGTAAAGATCCCAAAAGAAATCAGTGACCAGGAACGCACTCTTCTTGAAAACTTGGCTCTACGCAAGGCATCTAATCGAGCTGTTAAAGGAAACTTTGACAAACATGTAAATGAAGATCAAAAACACTTTCAAGTAAGCCACAGAAAAGAACAGGCTTCATCATGGTGGCATTCGATTAAAGGATTCTTTGGGAAAAGCCAGTCGCGCGATGGATTTGCATCAGTTAGCGTGGAAGTATCACTACCATTGTGGAGATCGAGCAAGCTAGATTCTTCTTATGTGGTGTCTTATATAATGGTTTTCATTCTAACTTCCATCTTCACGTTAGTGAGAAAGAATCACTCAACTTTATTTCAACGACGAGGAATACGGGCTTCTTCCTCATTCAAGAAGTACTACTCCGATCTAAGTGAAGTTCATTAG 1341 42.13 MNKGPGAEEKFKEISAAYEVLSDDEKRSLYDQFGEAGLQGEYGGSTSGSQGVDPYEVFDTFFGGGNGLFGARVETGGFNMNMSNKESQNLDIRYDLHLSFEESVFGGEREVEISYLGPCETCDGTGAKSSSSIKSCSSCRGRGAAMKTQKTPFGIMSQVSTCPNCGGDGKIITEHCRNCGGNGQLKFKRKMNVVIPAGVNDGATMQIQREGSFDKKRGIVGDLYIVLHVEEKSGFQRDGLNLYSKIDIDYIEAILGSVVKVETVDGVKDLQIPPGIQPGDTVKLSRMGVPDINKPSVRGDHHFIVNVKIPKEISDQERTLLENLALRKASNRAVKGNFDKHVNEDQKHFQVSHRKEQASSWWHSIKGFFGKSQSRDGFASVSVEVSLPLWRSSKLDSSYVVSYIMVFILTSIFTLVRKNHSTLFQRRGIRASSSFKKYYSDLSEVH 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11917897 11926618 - Bda024200.3 Bda06g00866 8448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00866 446 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 106 185 IPR036410 -
Bda06g00866 446 Hamap Chaperone protein DnaJ [dnaJ]. 2 349 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Bda06g00866 446 SUPERFAMILY HSP40/DnaJ peptide-binding domain 91 230 IPR008971 GO:0006457|GO:0051082
Bda06g00866 446 ProSitePatterns Nt-dnaJ domain signature. 11 30 IPR018253 -
Bda06g00866 446 SUPERFAMILY HSP40/DnaJ peptide-binding domain 235 321 IPR008971 GO:0006457|GO:0051082
Bda06g00866 446 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 1 334 - -
Bda06g00866 446 Gene3D - 231 343 - -
Bda06g00866 446 ProSiteProfiles Zinc finger CR-type profile. 106 188 IPR001305 GO:0031072|GO:0051082
Bda06g00866 446 ProSiteProfiles dnaJ domain profile. 1 34 IPR001623 -
Bda06g00866 446 CDD DnaJ 1 23 IPR001623 -
Bda06g00866 446 Gene3D - 119 183 - -
Bda06g00866 446 PANTHER EXPRESSED PROTEIN 1 334 - -
Bda06g00866 446 Gene3D - 91 225 - -
Bda06g00866 446 Pfam DnaJ domain 3 31 IPR001623 -
Bda06g00866 446 Pfam DnaJ central domain 119 183 IPR001305 GO:0031072|GO:0051082
Bda06g00866 446 SUPERFAMILY Chaperone J-domain 3 75 IPR036869 -
Bda06g00866 446 CDD DnaJ_zf 119 183 IPR001305 GO:0031072|GO:0051082
Bda06g00866 446 CDD DnaJ_C 91 313 - -
Bda06g00866 446 PRINTS DnaJ domain signature 26 45 IPR001623 -
Bda06g00866 446 PRINTS DnaJ domain signature 6 26 IPR001623 -
Bda06g00866 446 Gene3D DnaJ domain 1 72 IPR036869 -
Bda06g00866 446 Pfam DnaJ C terminal domain 92 310 IPR002939 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00866 K03686 dnaJ; molecular chaperone DnaJ - zju:107435129 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00866 Bda-Chr6:11917897 Bda10g00080 Bda-Chr10:1714249 1.74E-64 dispersed
Bda06g00866 Bda-Chr6:11917897 Bda04g00097 Bda-Chr4:2083164 1.78E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g173 . . Bda06g00866 . . . . Bma12g01283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g01585 . . Blo15g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007152 1 1 1 1 0 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 2 1 1 1 3 1 0 1 0 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00866 Bda_Chr06 FPKM 30.048889 0.0 0.0 46.8843 26.748144 32.897404 29.054369 0.0 0.0