Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00868 ATGGCGTCGCTAAATTGGGTCCCTATCAGAGGCAAGAACCCAGTTGCTGATTTTCCCAAAACTCGCTCTCCCACGACTCTCAATCGCCTTGGAAGACTCGGGTTGAAGGTGGTTGCTTCTGAAACTCAGACGGAGCCTGATCTGAGCGTGACCGTCAATGGACTGCACATGCCGAACCCGTTTGTAATCGGGTCGGGTCCTCCCGGGACTAACTATACGGTTATGAAAAGAGCCTTTGACGAAGGCTGGGGTGCCGTGATTGCCAAAACTGTATCCCTAGATGCAGCAAAAGTTGTGAATGTAACACCGCGATATGCCCGCTTACGAGTCGGAGCAAATGGCTCTGCCAAAGGGCAAATCATTGGATGGGAGAACATCGAGCTCATAAGCGATCGGCCCCTCGAAACCATGTTGAAAGAATTCAAGCAATTGAAAAAAGAATACCCGGATAGAATTCTAATCGCTTCAATCATGGAGGAGTATGACAAATCTGCATGGGAAGAGCTGATTGACCGAGTCGAGCAAACGGGAGTTGATGCTATTGAAATAAATTTCTCGTGCCCCCACGGCATGCCTGAGCGGAAAATGGGCGCTGCAGTTGGACAGGATTGTGCTCTTTTGGAAGAGGTTTGTGGCTGGATCAATGCCAAAGCTACAGTTCCTGTTTGGGCTAAGATGACTCCTAATATAACTGACATTACTCAGCCAGCGAGGGTGTCCTTGAAATCTGGGTGCGAGGGAATAGCTGCTATTAATACAATCATGAGCGTAATGGGAATCAATCTTCAAACATTACGGCCCGAGCCATCTGTTGAGGGATACTCAACTCCAGGAGGCTATTCTTCCAAGGCAGTTCATCCTATTGCACTTGGGAAAGTGATGAGTATTGCCAAAATGATGAAGTCAGAATTTGGCAACACAGATTGCTCTTTATCCGGTATCGGGGGCGTGGAAACTGGTAGCGATGCAGCCGAGTTTATTCTAGTCGGAGCAAATACTGTTCAGGTCTGTACGGGCGTTATGGTGCACGGATACGGCCTTGTGAAGAAGCTGTGTTCCGAGCTGAAGGAGTTTATGAAGACCCATAACTTCTCTACCGTTGAAGATTTCAGAGGGGTTTCGCTGCAGTACTTTACGACTCACACCGACTTGGTGCGAAGGCAACAAGAAGCGATACAACTGAGAAAAGCTATAAAGAAAGGTCTGCTGTCGGACAAAGATTGGACGGGAGACGGATTTGTGAATGAAACCGAGAGCATGGTGTCTAACTGA 1272 48.19 MASLNWVPIRGKNPVADFPKTRSPTTLNRLGRLGLKVVASETQTEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVVNVTPRYARLRVGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKKEYPDRILIASIMEEYDKSAWEELIDRVEQTGVDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDITQPARVSLKSGCEGIAAINTIMSVMGINLQTLRPEPSVEGYSTPGGYSSKAVHPIALGKVMSIAKMMKSEFGNTDCSLSGIGGVETGSDAAEFILVGANTVQVCTGVMVHGYGLVKKLCSELKEFMKTHNFSTVEDFRGVSLQYFTTHTDLVRRQQEAIQLRKAIKKGLLSDKDWTGDGFVNETESMVSN 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11935272 11937525 - Bda024202.1 Bda06g00868 8450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00868 423 CDD DHPD_FMN 47 355 - -
Bda06g00868 423 TIGRFAM pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 48 374 IPR005720 GO:0005737|GO:0016627
Bda06g00868 423 PANTHER DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] 24 423 IPR044512 GO:0006210|GO:0006212
Bda06g00868 423 Pfam Dihydroorotate dehydrogenase 48 359 IPR005720 GO:0005737|GO:0016627
Bda06g00868 423 Gene3D Aldolase class I 48 365 IPR013785 -
Bda06g00868 423 SUPERFAMILY FMN-linked oxidoreductases 41 375 - -
Bda06g00868 423 PANTHER BNAA01G27800D PROTEIN 24 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00868 K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] - mnt:21402274 744.191
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00868 Bda14g01150 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g164 Blo04g00859 . Bda06g00868 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01150 Bpe07g01089 Bpe15g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g166 . . Bda06g00868 . . . . Bma12g01285 . Cmo18g00064 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00733 Chy12g01380 Cme12g01813 . Blo15g00017 . . Bpe07g01089 . . . . . . . Cma18g00085 Car13g00813 Car18g00074 Cpe09g01105 . Bhi08g01329 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008474 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00868 Bda_Chr06 FPKM 17.564102 19.872751 17.92724 19.455462 25.884914 23.338015 26.821301 20.340506 21.338512