Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00898 ATGTCTTCCACCTTCAGCGGCGATGAAACTGCTCCCTTTTTCGGCTTCCTTGGCGCCGCTGCCGCTCTTGTCTTCTCCTGTATGGGAGCTGCTTATGGTACCGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGGGTAATGAGGCCCGAGCTGGTTATGAAATCTATTGTTCCAGTAGTTATGGCTGGAGTTTTGGGGATATATGGTTTGATTATTGCTGTGATTATCAGCACTGGGATCAATCCCAAGGCCAAATCGTATTACCTATTTGATGGTTATGCTCATTTGTCATCTGGACTTGCTTGTGGCCTTGCTGGGCTGTCAGCAGGAATGGCAATTGGTATTGTTGGCGATGCTGGTGTCCGAGCCAATGCACAACAGCCAAAACTTTTTGTTGGGATGATTTTGATTCTCATCTTTGCTGAGGCGCTGGCACTCTATGGCCTCATTGTTGGCATCATCTTGTCTTCACGAGCTGGCCAGTCCAGAGCAGAGTAG 498 48.8 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17380457 17382683 - Bda024287.1 Bda06g00898 8480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00898 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bda06g00898 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Bda06g00898 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bda06g00898 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Bda06g00898 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda06g00898 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda06g00898 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda06g00898 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda06g00898 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bda06g00898 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Bda06g00898 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Bda06g00898 165 Gene3D - 11 162 IPR035921 -
Bda06g00898 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bda06g00898 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00727 Bda-Chr1:34575149 Bda06g00898 Bda-Chr6:17380457 4.24E-23 dispersed
Bda01g01524 Bda-Chr1:51150846 Bda06g00898 Bda-Chr6:17380457 4.65E-113 dispersed
Bda06g00898 Bda-Chr6:17380457 Bda08g00963 Bda-Chr8:18911450 4.82E-108 dispersed
Bda06g00898 Bda-Chr6:17380457 Bda08g01232 Bda-Chr8:50482970 1.62E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00898 K02155 - cit:102607521 288.5