Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00929 ATGAATGATCTTATGACCAAATCATTTCTGAGCTATGTAGAACTAAAGAAACAAGCAATGAAGGATTTGGAAGCTGGGCCAGACATCGAGATGGGGAAGCTTGACCCTGCAGATGAACAAAATCTCTCGCACTTTTTTGAAGAAGTTTCTGCGATCAAAGCAAGCATGGAAGAGATTACTAATCTTCTCTTCGACCTTCAAAACCTGAACGAAGAGGCGAAATCCATTTGTAATGCCAATGTACTTAGTGGAGTCCGAGAAAAAATCAACTCAGACATGGTCGAGGTTCTTCGAAAGGCAAAGAATATCAAAACGAAGCTTGGATTTCTTGATCAATCCAATATCGCCAATCGAAAAGTATCAAAATCTTACAAAGAAGGAAGCCCAGTTGATAGAACGAGAATTTCTGTTACGAATGGGCTGAGAATTAAACTGAGAGATATGATGAATGATTTTCAAGCATTGAGAGAGCAGATTCTGAAGGATCACAAAGAGGGTCTAAAGAGGAGGTATTTTGCTGCAACTGGAGAAGAAGCTAGCGAGGAAGCCATAGAAAGGATGATTTCGGTAGGTGGGAAAGAGAAGATCTTTGAAGGGAAGAAAGAGTTGTTAATGGAGAATGAGGAGAGAGAAGAAGCTTTGAAGGAGATACAGAGGAGCTTGAAGGAGCTTCATCAGGTTTTTCTTGATATGGCTGTTCTGGTAGAAACTCAAGGAGAGCATATGAATAATATTGAGCAGAATATGAGTTGGGCTGGAGCTCATATCCAGGATGGAACAAAGGAGCTGTTGGATGCCAAGAAATTGAAGAGCAGAGCTCAATGGACTTACTGGATTGTAGCTCTGGTTTTAATTCTGCTGTTCATTTGCCTGATTTCTACCTTGGTTTTCTGA 894 40.6 MNDLMTKSFLSYVELKKQAMKDLEAGPDIEMGKLDPADEQNLSHFFEEVSAIKASMEEITNLLFDLQNLNEEAKSICNANVLSGVREKINSDMVEVLRKAKNIKTKLGFLDQSNIANRKVSKSYKEGSPVDRTRISVTNGLRIKLRDMMNDFQALREQILKDHKEGLKRRYFAATGEEASEEAIERMISVGGKEKIFEGKKELLMENEEREEALKEIQRSLKELHQVFLDMAVLVETQGEHMNNIEQNMSWAGAHIQDGTKELLDAKKLKSRAQWTYWIVALVLILLFICLISTLVF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25095255 25096148 + Bda022551.1 Bda06g00929 8511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00929 297 PANTHER SYNTAXIN 4 293 IPR045242 -
Bda06g00929 297 Coils Coil 52 72 - -
Bda06g00929 297 CDD SNARE_syntaxin1-like 208 263 - -
Bda06g00929 297 CDD SynN 42 192 IPR006011 GO:0016020
Bda06g00929 297 SUPERFAMILY t-snare proteins 41 259 IPR010989 GO:0016020|GO:0016192
Bda06g00929 297 Pfam Syntaxin 45 239 IPR006011 GO:0016020
Bda06g00929 297 Gene3D - 37 167 - -
Bda06g00929 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Bda06g00929 297 Gene3D - 197 296 - -
Bda06g00929 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Bda06g00929 297 PANTHER SYNTAXIN-112 4 293 - -
Bda06g00929 297 SMART tSNARE_6 199 266 IPR000727 -
Bda06g00929 297 Coils Coil 200 227 - -
Bda06g00929 297 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00358 Bda-Chr6:5725017 Bda06g00929 Bda-Chr6:25095255 1.85E-55 dispersed
Bda06g00929 Bda-Chr6:25095255 Bda11g01860 Bda-Chr11:53717274 8.95E-117 dispersed
Bda13g01915 Bda-Chr13:43552402 Bda06g00929 Bda-Chr6:25095255 1.46E-07 dispersed
Bda06g00929 Bda-Chr6:25095255 Bda14g01003 Bda-Chr14:8450716 4.15E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00929 K08486 - csin:114258522 410.994