Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00931 ATGGACACATCACTGCCGGGAATGTTGTCCTGTTTCACTGCCAATGGGAGTTCTACGGACATGGCTGTCCTGCAGAGACATATGGCTCGCCGGAAATGTCAAGAAAAACAGTTGAAAGAGTCGGATCGGAACCTGAACTCCTATGGCTGTTTCAGTTTGAATGAGTTTAGGAGCTTGTTTTCTTCTCCGATCCATGTGAGTAAGGTCCAAAGCGTTCAGGGTTTGATGGGCGGAAATGAGTCGGCACTGGGAGAGGTAGTGGTCGGCTCGCTGAAGCCTGACCCAGGTTTTGATGTTGTCTGGCCTGAGTTGGAGATGCCAAGTATGGAATCCGGATCGTCTGGGTTGGTTAAAGGAACAACTGAGCTTGAGGCGAACTACTCTATTTCTAGAGCTTCTAGCTCTACACCTGCAATGGCAGCTCCGCCCCCCGGGGAGGCCAAATTTCAAGAATCAACGGAGAAGATGAACTCAGCCGCCGCTGGAAGGGATAGCTTCAAGAGGAGGAGAGCTCAAAAGATGCAAAATACCATGGAGACAGACAGCAAAGAGAAGAAGATCAAAGTAAGCATAGAAGAAACAGAGATGACAGACCAAAAAAGCACTAAAACCGACAACCATAGAGAAACCTCAGCCGACACAGCCAAAGAAAACAACTCAAAAGCTTCCGACTTTCAAAAGCCAGATTACATCCACGTTCGAGCACGTCGCGGCCAGGCGACAGACAGCCATAGCCTAGCCGAAAGAGTGAGGAGAGAGAAGATTAGTGAGAGAATGAGATATTTGCAGGATTTAGTCCCAGGATGCAACAAAATCACAGGCAAAGCTGGAATGCTAGACGAAATCATCAACTACGTTCAATCGCTTCAATGCCAAGTAGAGTTTCTATCGATGAAATTAGCCACCTTAAACCCCAGGCTAGAACCCATAGTTGATGGAATCTTCGCAAAAGAGGCTTTTCCTTCTTGCACGTCAAATTTTCCAAACGTGGGAATTTCATCAGAAGCCAACAATTCAGCTTACACCCACCAGTTCAATCCATTACAGCAAATGCTTTCTTCATCTGGTTTGGAAATGGAAAGAAGCCCCTCAGATATCAGCCTTCGTCGAACCATTAGCACACCCGTTTCGTTCATCCCGGAAACATTTGTTAGCTCTTCCTGCTTCACACAAAACCAGCCTCCTTCAGCATTTGAAGCTGATTTACAAAATTTTTACAACGTCTCGTTTGATAAAGGAAGATCAACAGATTTTTCATCTCACTCGTATACAGGTAGATAA 1281 45.98 MDTSLPGMLSCFTANGSSTDMAVLQRHMARRKCQEKQLKESDRNLNSYGCFSLNEFRSLFSSPIHVSKVQSVQGLMGGNESALGEVVVGSLKPDPGFDVVWPELEMPSMESGSSGLVKGTTELEANYSISRASSSTPAMAAPPPGEAKFQESTEKMNSAAAGRDSFKRRRAQKMQNTMETDSKEKKIKVSIEETEMTDQKSTKTDNHRETSADTAKENNSKASDFQKPDYIHVRARRGQATDSHSLAERVRREKISERMRYLQDLVPGCNKITGKAGMLDEIINYVQSLQCQVEFLSMKLATLNPRLEPIVDGIFAKEAFPSCTSNFPNVGISSEANNSAYTHQFNPLQQMLSSSGLEMERSPSDISLRRTISTPVSFIPETFVSSSCFTQNQPPSAFEADLQNFYNVSFDKGRSTDFSSHSYTGR 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25133007 25134538 - Bda022553.1 Bda06g00931 8513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00931 426 CDD bHLH_AtBPE_like 229 314 - -
Bda06g00931 426 Pfam Helix-loop-helix DNA-binding domain 243 290 IPR011598 GO:0046983
Bda06g00931 426 MobiDBLite consensus disorder prediction 161 228 - -
Bda06g00931 426 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 413 IPR024097 GO:0006355
Bda06g00931 426 Coils Coil 24 44 - -
Bda06g00931 426 MobiDBLite consensus disorder prediction 131 228 - -
Bda06g00931 426 SMART finulus 245 295 IPR011598 GO:0046983
Bda06g00931 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 308 IPR036638 GO:0046983
Bda06g00931 426 Gene3D - 236 310 IPR036638 GO:0046983
Bda06g00931 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 289 IPR011598 GO:0046983
Bda06g00931 426 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 41 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02113 Bda-Chr1:57180782 Bda06g00931 Bda-Chr6:25133007 4.67E-52 dispersed
Bda06g00931 Bda-Chr6:25133007 Bda08g00933 Bda-Chr8:17209090 0 dispersed
Bda12g00371 Bda-Chr12:4266003 Bda06g00931 Bda-Chr6:25133007 5.71E-23 dispersed
Bda14g00556 Bda-Chr14:4083908 Bda06g00931 Bda-Chr6:25133007 6.70E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16044 PF00010 HLH 6.60E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00931 - - jre:109013802 402.905