Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00949 ATGGGCGCCGAAGGGATGTATGTCAGGAGAAATAAAAGGCCAAAATTAGCTGACCATGGTAATGATACTTTGCGAATTGTTTCCTCTGCAAAGGCTGATGCCACTGAACAAAGGAGACTCAGAACTTCCGGAAACGTGATTGATTACTCAAGCCCATTTTCCATTCCTGATTTGCTTGATGGTTTAGATTCTGGAAAATACGGGAGTGTCACGAAAGAAATAGAAGCCCTCATGGCTAAAAAGATGGAAATTCTTAACCCCTACATTTCACAGTATCCGGTTCTTTCTTCTATGTTTTTGCAAGTTGAAAGTCGGGTTAAGGAGGCCCAAAATTTTATAAATCATCAAGCTTCTCGTGTCACAACTAATGTCATTGATCTGGAGGATGACTCAGTTCCTTGTAAAGAAATGGCAGCATATCACAAGTCCGTGATAGTTATCGATTCAGATGATGAAAATTGTGGAAACAAAAAGCCTCCTCGTCTTTTTCAGGAAGTTGTGTTGGAAAAAGCTTCTGGACAGCTTGTTACAAAAAATTTAGTGGATTACCATGCTCTATTGAGGCACTCTGATGATGGTAAAGTTATAAAGAATGGGGCAGCGGCAACACATTGTTTCACACATGAAGCAAACTTTGTGAAAGATAAAGGTGTCTATGGTGGAGTTGAAGAGGAGGTGGATCAAGGAAGTGAGAGAGAAAATGATGGCCTCGACGATATTTGGACAGAGATGAATATGGCTTTAGAATGTTCAAAGGATTCTCCTGTAGTGTCGTCACTACATCAACCAGAAAATGATGACATGGAGGATTGCGATCATTCATTTGTCTTGAAGGATGACATTGGTTATGTTTGTCGCATTTGTGGTGTCATAGACAGGGGCATTGAAACCATTTTTGAGTTCCAATACAAAGTTAAAAAGAGTTCCCGAACTTACATGTCTGAATCTCGAAATGCTAAATACAAAGATATGGATATGGATGGAGTTAAATGGTCTGAAGATGACATGACAGTGACTCAAATTTGTGCTCATCCAAGGCATATGAAACAAATGAAACCGCATCAAATTGAGGGTTTCAATTTTCTTATCAGCAACCTAGTGACTGAAAATCCTGGGGGTTGTATTTTAGCCCATGCTCCAGGATCTGGAAAGACATTCATGATAATCAGTTTCATGCAAAGTTTCTTGGCTAAGTATCTGCATGCAAGACCTCTAGTTGTGCTTCCTAAGGGAATTTTAGCTACGTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAAGATATTCCACTTTTGGACTTTTATTCTGTTAAAGCAGACAGCCGGTCTCAACAATTGGTGGTTTTGAAAAAATGGGTCGAGAACAGAAGTATTCTTTTCTTGGGATATAAACAATTCTCTTCCATTATGTGTGACAGTGGATCCAGCGTGACGGCCACCTCGTGTCAGGAAATATTGTTGAAGGCTCCGTCAATTCTTATTTTGGATGAAGGGCACACCCCAAGAAATGAAAACACTGATGTGTTGCAAACTCTTGCAAAAGTTCAAACACCTAGAAAAGTTGTTCTTTCGGGTACTCTTTACCAAAATCATGTCAAAGAAGTATTCAATGTGTTGAATCTTGTTCGCCCAAAGTTTACACGATCGGAAATTTCCCGACCCATTATTAAACGTATCATGACTAGAGTGGATATAAGTGGTGTCCGGAAGAATGTCAAAATAGGGGCAAGTGCATCTTTTTATGACTTGGTAGAGCATACCCTTCAGAAGGATAAGGATTTTAGAAGAAAAGTGGCTGTCATTCAAGATTTGCGCGAGATGACAAGAAATGTCCTTCATTATTACAAAGGAGATTTCCTGGATGAGCTTCCTGGACTTGTTGACTTCACTGTAGTACTAAATCTCAGTCCCAAGCAGAAACATGAAGTTACACAGTTGAAAAAGTTGCCCCGGAAGTTTAAAGTAAGTTCTGTTGGTAGTTCTATTTATCTGCACCCAAAATTGAAACATTTTCCTGAAATTTCTACCACAACTGATGAAAAAATGGACGAGATGTTAGATAACATAGACGTTAAAGATGGAGTCAAGGCAAAATTCTTTCTCACCATGCTGAACTTGTGTGAGGCAGCTGCGGAGAAACTATTGGTGTTTAGTCCGTATCTTGTACCTCTAAAGTTTTTGGAGAGATTGGCCGTGAAGGCTAAAGGTTGGAGTCAAGGAAGAGAAATTTTTGTTATTTCAGGTGAATCGACTTCTGAGCAACGAGAGTTTTCTATGGACCGATTCAATAATTCACCTGATGCGAAAGTATTTTTTGGCTCTATTAAAGCATGTGGAGAGGGCATATCATTAGTAGGGGCATCTCGAATCATTGTTTTGGACGTTCATCTTAACCCTTCTGTGACTCGCCAAGCCATAGGCCGTGCTTTTCGCCCTGGTCAAAAGAAAAAAGTATTTGCATATCGATTGGTTGCTGCTGAGTCACCTGAAGAAGAAGATCATAGCACTTGCTTCAAGAAAGAATTGATCTCAAAGATGTGGTTTGAATGGAATGAATATTGTGGTTACCACGATTTTGAAGTGGAGACTGTTGACGTGAAAGATTGTGGTGATTTATTCCTTGAAAGTTCTACCTTAAGCGAAGATGTCAACGTATTGTATAAAAGGTAA 2667 39.67 MGAEGMYVRRNKRPKLADHGNDTLRIVSSAKADATEQRRLRTSGNVIDYSSPFSIPDLLDGLDSGKYGSVTKEIEALMAKKMEILNPYISQYPVLSSMFLQVESRVKEAQNFINHQASRVTTNVIDLEDDSVPCKEMAAYHKSVIVIDSDDENCGNKKPPRLFQEVVLEKASGQLVTKNLVDYHALLRHSDDGKVIKNGAAATHCFTHEANFVKDKGVYGGVEEEVDQGSERENDGLDDIWTEMNMALECSKDSPVVSSLHQPENDDMEDCDHSFVLKDDIGYVCRICGVIDRGIETIFEFQYKVKKSSRTYMSESRNAKYKDMDMDGVKWSEDDMTVTQICAHPRHMKQMKPHQIEGFNFLISNLVTENPGGCILAHAPGSGKTFMIISFMQSFLAKYLHARPLVVLPKGILATWKKEFQTWQVEDIPLLDFYSVKADSRSQQLVVLKKWVENRSILFLGYKQFSSIMCDSGSSVTATSCQEILLKAPSILILDEGHTPRNENTDVLQTLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFTRSEISRPIIKRIMTRVDISGVRKNVKIGASASFYDLVEHTLQKDKDFRRKVAVIQDLREMTRNVLHYYKGDFLDELPGLVDFTVVLNLSPKQKHEVTQLKKLPRKFKVSSVGSSIYLHPKLKHFPEISTTTDEKMDEMLDNIDVKDGVKAKFFLTMLNLCEAAAEKLLVFSPYLVPLKFLERLAVKAKGWSQGREIFVISGESTSEQREFSMDRFNNSPDAKVFFGSIKACGEGISLVGASRIIVLDVHLNPSVTRQAIGRAFRPGQKKKVFAYRLVAAESPEEEDHSTCFKKELISKMWFEWNEYCGYHDFEVETVDVKDCGDLFLESSTLSEDVNVLYKR 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26287979 26292779 + Bda022583.1 Bda06g00949 8531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00949 888 SMART ultradead3 347 555 IPR014001 -
Bda06g00949 888 Pfam Helicase conserved C-terminal domain 704 811 IPR001650 -
Bda06g00949 888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 365 544 IPR014001 -
Bda06g00949 888 PANTHER PROTEIN CHROMATIN REMODELING 35 5 888 - -
Bda06g00949 888 Gene3D - 317 577 IPR038718 -
Bda06g00949 888 Pfam SNF2-related domain 368 638 IPR000330 GO:0005524|GO:0140658
Bda06g00949 888 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 5 888 IPR044567 GO:0080188
Bda06g00949 888 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 701 866 IPR001650 -
Bda06g00949 888 MobiDBLite consensus disorder prediction 1 21 - -
Bda06g00949 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 547 IPR027417 -
Bda06g00949 888 CDD SF2_C_SNF 695 823 - -
Bda06g00949 888 Gene3D - 623 876 IPR027417 -
Bda06g00949 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 850 IPR027417 -
Bda06g00949 888 SMART helicmild6 724 812 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00949 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - jre:108980838 1209.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00949 Bda-Chr6:26287979 Bda09g00688 Bda-Chr9:10776701 2.21E-89 dispersed
Bda06g00949 Bda-Chr6:26287979 Bda09g00676 Bda-Chr9:10387762 8.31E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g510 . . Bda06g00949 . . . . Bma12g00550 . . . . . . . . Cpe15g00525 . . . . . . . . . . . . . . . . . . . . . Cme01g01480 . . . . . . . . . . . . . . Car19g00495 . . . . . . . . . . . . . . . . . . Chy01g00828 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16047 PF00176 SNF2_N 6.60E-21 CL0023 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00949 Bda_Chr06 FPKM 126.605133 129.540085 117.613091 124.449516 146.849579 151.611938 139.670258 165.048538 170.670685