Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00954 ATGAAGATCCGATGCGATGTTTGTGGCAAACGCGAAGCCTCCGTCTTTTGCTCCGCCGACGAAGCCGCTCTCTGCGACGGCTGTGACAGCCATGTCCACCATGCGAACAAGCTCGCCGGACAACACACCCGTTTCTCTCTCCTCAATCCCACCTTCAAAGAATCACCTCTCTGCGACATCTGCCAGGAGAGGCGAGCTTTCCTTTTCTGTCAAGAAGACCGGGCAATCCTCTGTAGAGAATGCGACGTTCCAATTCACAGAGCAAACGAACATACCGAGAAACACAATAGGTTTCTTCTTACAGGCGTCAAGCTTTCTTCACCTTATTCGTTCTACCCAGCTTGTTCTTCGTCCAGTGGGTGTGAAGCATCCATTGACACCGAAAGTAGAAGGTCGAATACACGGACAAAGAGATCATCAAATACAGCTTGCAATGGAGTATCTTCTTGTCCGTTTGAAATATCTCAGGCGGAAGGCATTGATTCTGGAACCTTCTCAGCAAGTAGTATATCAGAGTACTTAGAGACGTTGCCTGGATGGGGAATAGAAGATTTTCTTGATCCATCATTTTCCTCCCATGGCTTCTGTAAAGTTTTTGGTAGACCCAACATGGAATGA 618 47.73 MKIRCDVCGKREASVFCSADEAALCDGCDSHVHHANKLAGQHTRFSLLNPTFKESPLCDICQERRAFLFCQEDRAILCRECDVPIHRANEHTEKHNRFLLTGVKLSSPYSFYPACSSSSGCEASIDTESRRSNTRTKRSSNTACNGVSSCPFEISQAEGIDSGTFSASSISEYLETLPGWGIEDFLDPSFSSHGFCKVFGRPNME 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26410287 26410992 + Bda022590.1 Bda06g00954 8536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00954 205 Gene3D Classic Zinc Finger 1 98 - -
Bda06g00954 205 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Bda06g00954 205 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Bda06g00954 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 - -
Bda06g00954 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda06g00954 205 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bda06g00954 205 CDD Bbox1_BBX-like 57 100 - -
Bda06g00954 205 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 197 - -
Bda06g00954 205 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bda06g00954 205 CDD Bbox1_BBX-like 5 47 - -
Bda06g00954 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00954 Bda14g00574 CCT
Bda06g00954 Bda14g00574 ECH
Bda06g00954 Bda08g00955 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00506 Bda-Chr1:32057229 Bda06g00954 Bda-Chr6:26410287 1.54E-62 dispersed
Bda06g00954 Bda-Chr6:26410287 Bda08g01236 Bda-Chr8:50639497 7.77E-60 dispersed
Bda14g00574 Bda-Chr14:4384124 Bda06g00954 Bda-Chr6:26410287 1.32E-85 wgd
Bda06g00954 Bda-Chr6:26410287 Bda08g00955 Bda-Chr8:18590465 1.54E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16048 PF00643 zf-B_box 1.10E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00954 - - zju:107426654 270.011