Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00954 ATGAAGATCCGATGCGATGTTTGTGGCAAACGCGAAGCCTCCGTCTTTTGCTCCGCCGACGAAGCCGCTCTCTGCGACGGCTGTGACAGCCATGTCCACCATGCGAACAAGCTCGCCGGACAACACACCCGTTTCTCTCTCCTCAATCCCACCTTCAAAGAATCACCTCTCTGCGACATCTGCCAGGAGAGGCGAGCTTTCCTTTTCTGTCAAGAAGACCGGGCAATCCTCTGTAGAGAATGCGACGTTCCAATTCACAGAGCAAACGAACATACCGAGAAACACAATAGGTTTCTTCTTACAGGCGTCAAGCTTTCTTCACCTTATTCGTTCTACCCAGCTTGTTCTTCGTCCAGTGGGTGTGAAGCATCCATTGACACCGAAAGTAGAAGGTCGAATACACGGACAAAGAGATCATCAAATACAGCTTGCAATGGAGTATCTTCTTGTCCGTTTGAAATATCTCAGGCGGAAGGCATTGATTCTGGAACCTTCTCAGCAAGTAGTATATCAGAGTACTTAGAGACGTTGCCTGGATGGGGAATAGAAGATTTTCTTGATCCATCATTTTCCTCCCATGGCTTCTGTAAAGTTTTTGGTAGACCCAACATGGAATGA 618 47.73 MKIRCDVCGKREASVFCSADEAALCDGCDSHVHHANKLAGQHTRFSLLNPTFKESPLCDICQERRAFLFCQEDRAILCRECDVPIHRANEHTEKHNRFLLTGVKLSSPYSFYPACSSSSGCEASIDTESRRSNTRTKRSSNTACNGVSSCPFEISQAEGIDSGTFSASSISEYLETLPGWGIEDFLDPSFSSHGFCKVFGRPNME 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26410287 26410992 + Bda022590.1 Bda06g00954 8536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00954 205 Gene3D Classic Zinc Finger 1 98 - -
Bda06g00954 205 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Bda06g00954 205 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Bda06g00954 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 - -
Bda06g00954 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda06g00954 205 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bda06g00954 205 CDD Bbox1_BBX-like 57 100 - -
Bda06g00954 205 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 197 - -
Bda06g00954 205 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bda06g00954 205 CDD Bbox1_BBX-like 5 47 - -
Bda06g00954 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00954 - - - zju:107426654 270.011
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00954 Bda14g00574 CCT
Bda06g00954 Bda14g00574 ECH
Bda06g00954 Bda08g00955 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00506 Bda-Chr1:32057229 Bda06g00954 Bda-Chr6:26410287 1.54E-62 dispersed
Bda06g00954 Bda-Chr6:26410287 Bda08g01236 Bda-Chr8:50639497 7.77E-60 dispersed
Bda14g00574 Bda-Chr14:4384124 Bda06g00954 Bda-Chr6:26410287 1.32E-85 wgd
Bda06g00954 Bda-Chr6:26410287 Bda08g00955 Bda-Chr8:18590465 1.54E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00661 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 50.2 1.3e-72 270.4
Bda14g00574 CCT,ECH 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 6.6e-52 201.4
Bda06g00954 BCT,CCT,ECH 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 54.4 8.7e-52 201.1
Bda08g00955 BCT,CCT,ECH 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 2.5e-51 199.5
Bda10g00172 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 1.6e-52 202.6
Bda14g00989 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 59.1 1.1e-50 196.4
Bda11g01843 CCT,ECH 1 182 C2C2-CO-like Transcription Factor Family AT2G21320 57.7 1.9e-50 195.7
Bda10g00172 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.8e-54 209.1
Bda11g01843 CCT,ECH 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 59.4 1.1e-51 199.9
Bda14g00989 . 1 174 C2C2-CO-like Transcription Factor Family AT4G38960 58.6 2.9e-49 191.8
Bda06g00954 BCT,CCT,ECH 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 2.8e-55 212.2
Bda08g00955 BCT,CCT,ECH 1 189 C2C2-CO-like Transcription Factor Family AT4G39070 56.7 4.7e-55 211.5
Bda14g00574 CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 5.7e-53 204.5
Bda08g01236 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.2e-47 186.8
Bda01g00506 CCT,ECH 1 112 C2C2-CO-like Transcription Factor Family AT4G39070 64.3 3.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16048 PF00643 zf-B_box 1.10E-07 No_clan Bda TF