Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00961 ATGCAGGTTGAAACCCTCGCTCTCCGTCCGTCGACCTCTGCTCAGTTCCTGAAACCTTCCGTTCGGAAACCTATATCTCGAGCTTCTGTTTTCTGCTCCCATCCTCCTCATTCTTTCTCCGTCATTCGCTTCCATCCGAATGCCCCTACGTTGATTCGGAAACGCTATGGTAAACGGTTTGGAATTCCTTGCAGTAAAAATAATATAGAAATCGTCGACTGTGGCCGTGAAGTTGAAAGCGAAAGTGATAATGGAGAAGAAGAAGAAGAAGAAGGCGGAGAAGAAGTTTTGGAGATTCAGAGTAAAAAACTGGAGAGCCAGGGATTGTGGGATCAAATGGAGGAGATTGTAAAGTTTACCGGTCCTGCCACTGGGCTGTGGCTGTGCGGGCCTTTGATGAGCATCATTGATACAGCGGTCATTGGTCAAGGAAGCTCCGTTGAGCTCGCTGCATTAGGGCCAGGAACTGTTTTCTGTGACTATACAAGTTATGTTTTCATGTTTCTTTCTATTGCTACTTCCAACATGGTAGCCACTGCCCTTGCCCGACAGGATAAAAGTGAAGTGCAGCATCATATATCCGTCTTGCTCTTTCTCGGTTTGATCTCTGGTTTATTGATGCTTTTGTTCACAAAACTATGGGGTTCAATGGCTCTAACTGCTTTTGCTGGCCCAAGGAATGCACATCTTGTTCCAGCAGCAGACTCTTACATTCAGATACGAGGTTTGGCCTGGCCTGCAGTTCTTGTTGGATGGGTTGCTCAAAGTGCAAGTCTTGGTATGAAAGATTCCTGGGGACCTCTGAAGGCTTTAGCGGTTGCAAGTGTTGTAAACGGCCTAGGTGATGTAATCTTGTGCATGGTTCTAGGCTATGGTATTGCTGGTGCAGCGTGGGCAACAATGGCATCACAAGTCATTGCCGCTTATATGATGATTGCAACTTTAAACAATAAAGGATACGATGCATTTTCCATTTCTATTCCTTCGCTCAAAGAATTAATATCAATACTTGGACTTGCTGCTCCAGTGTTTCTAACAATGATGTCAAAGGTGGCTTTTTACAGTCTCCTTGTTTATTTTGCTACGTCTATGGGCACACATACTATGGCTGCTCATCAGGTCATGATCCAAGCTTTCTGTATGTGCACGGTATGGGGTGAACCACTGTCTCAAACTGCACAGTCATTTATGCCTGAGTTGATATATGGAGCCGGTCGAAGTTTGGAAAAGGCCAGGATGTTGCTCAAGTCACTTGTAATCATTGGAGCTATACTTGGATCATTATTAGGGGTAATTGGAACTTGTGTTCCTTGGTTGTTCCCTAATATTTTTACTCGGGATCATATTGTCATCCAGGAGATGCACAAGGTATTGATCCCATATTTTATTGCATTAACAATAACACCTTCGACTCACAGCCTTGAAGGAACTTTACTGGCTGGACGGGACCTCAAATTTATTAGTTTGACAATGACTGGATGCTTTTCTCTTGGTGCCCTTCTTTTGTTGCTTGTAACCAGTAAAGGGTTTGGTCTGCAAGGCTGCTGGTACGCCCTTCTTGGATTTCAATGGGCTCGCTTTTTCATGGCCTTCCAGCGCCTTCTTTCTCCCAATGGTATACTTTACTCAAATGACTTGAGCCGGTACAAATTGGAAAAATTGAAGGCTGCATAG 1674 44.44 MQVETLALRPSTSAQFLKPSVRKPISRASVFCSHPPHSFSVIRFHPNAPTLIRKRYGKRFGIPCSKNNIEIVDCGREVESESDNGEEEEEEGGEEVLEIQSKKLESQGLWDQMEEIVKFTGPATGLWLCGPLMSIIDTAVIGQGSSVELAALGPGTVFCDYTSYVFMFLSIATSNMVATALARQDKSEVQHHISVLLFLGLISGLLMLLFTKLWGSMALTAFAGPRNAHLVPAADSYIQIRGLAWPAVLVGWVAQSASLGMKDSWGPLKALAVASVVNGLGDVILCMVLGYGIAGAAWATMASQVIAAYMMIATLNNKGYDAFSISIPSLKELISILGLAAPVFLTMMSKVAFYSLLVYFATSMGTHTMAAHQVMIQAFCMCTVWGEPLSQTAQSFMPELIYGAGRSLEKARMLLKSLVIIGAILGSLLGVIGTCVPWLFPNIFTRDHIVIQEMHKVLIPYFIALTITPSTHSLEGTLLAGRDLKFISLTMTGCFSLGALLLLLVTSKGFGLQGCWYALLGFQWARFFMAFQRLLSPNGILYSNDLSRYKLEKLKAA 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26775171 26779762 - Bda022602.1 Bda06g00961 8543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00961 557 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 44 546 - -
Bda06g00961 557 Pfam MatE 131 279 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda06g00961 557 MobiDBLite consensus disorder prediction 80 95 - -
Bda06g00961 557 CDD MATE_DinF_like 115 536 IPR044644 -
Bda06g00961 557 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 44 546 IPR044644 -
Bda06g00961 557 MobiDBLite consensus disorder prediction 77 96 - -
Bda06g00961 557 TIGRFAM matE: MATE efflux family protein 128 516 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00961 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - rcu:8284354 723.776
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00961 Bda14g00576 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00961 Bda-Chr6:26775171 Bda07g01031 Bda-Chr7:12152090 7.61E-18 dispersed
Bda14g00576 Bda-Chr14:4408926 Bda06g00961 Bda-Chr6:26775171 1.75E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g24 . . Bda06g00961 . . . . Bma12g00541 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00412 . . . Blo04g00535 . . Bda14g00576 . . Bma03g00570 . Sed01g0265 Cmo02g00371 . . . . . Cpe16g00272 Cpe05g01288 Bhi10g01946 Tan05g1243 Cmetu11g1869 . Hepe08g0979 . . . . . . . . . . Csa02g01304 . Cme11g00165
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00961 Bda_Chr06 FPKM 41.924324 42.730305 29.929996 30.499161 32.845776 40.321083 26.591969 53.274288 56.533886