Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00963 ATGGAGGCAATTAGAAAACAGGCGACCAAGTTGCGAGAACAGGTGGCTAGGCAACAACAGGCTGTCCTCAAGCAGTTTGGAGGTGGAGGGTATGGGGCTTCCGATAATGTCATAACTGACGAGGAAGAATTTCAACAGCATCAGAAACTTGAGAGGCTTTACATATCAACTCGTGCTGCCAAGCATTTTCAAAGGGATATTGTTCGTGGTGTTGAGGGTTACCTTGTTGCTGGTTTGAAACAAGTTGAAATTGGAACAAAGTTGTCGGAGGATAGTAGAAAATATGGTTCTGAAACTACATGCACTAGTGGCATGACATTGACTAGAGCTGCATCTAATTATGGACATGCCCGAGCTCAAATGGAAAAGGAACATGGAAATATGTTAAAAGCTCTTGGTACACAGGTTGCAGAGCCACTAAGAGCAATGGTAATGGGAGCTCCGCTGGAAGACGCTAGACATCTTGCTCAACGATATGATAGAATGCGACAAGAAACTGAAGCTCATGCAATTGAAGTTTTCAAGCGGCAAGCAAAAGTTAGAGAAACGCCAGGCAATGCTGAGAATGCTATGAAACTGGAAGCTGCTGAAGCAAAACTGCAAGATCTCAAGTCCAATATGTCCATTTTAGGGAAAGAAGCTTCTGCTGCTATGGCTGCTGTCGAAGCTCAACAACAGAGGTTAACTCTCCAACGACTAATTGCAATGGTTGAAGCAGAACGTACATATCATCAGAAAGTTCTTCAGATACTTGATCAACTTGAAAGTGAGATGATGTCAGCGCGGCAACGAATCGAAGCACCACCTACTCCAAGTGCTGATAATAGTAATTCCATGCCTCCACCATCATATGAAGAAGTTAATGGGGTGTATGCTTCTCAAGTGACTAATGGATTGACAGATGCCATGGGTTACTTCTTAGGGGAGGTTATGCATCAGTATCAAGCTGAATCTGATGTCGAACTGAATTTGTCAGTAGGTGACTATGTTGTTGTTCGAAAGGTGACAAACATCGGTTGGGCTGAGGGGGAATGCAAAGGGAAAGCTGGTTGGTTCCCATTTGGATATATTGAAAAACGGGATCGCGTTCTGGCCAGCAAGGTAGCTGAGGTGTTCTAA 1119 44.06 MEAIRKQATKLREQVARQQQAVLKQFGGGGYGASDNVITDEEEFQQHQKLERLYISTRAAKHFQRDIVRGVEGYLVAGLKQVEIGTKLSEDSRKYGSETTCTSGMTLTRAASNYGHARAQMEKEHGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQETEAHAIEVFKRQAKVRETPGNAENAMKLEAAEAKLQDLKSNMSILGKEASAAMAAVEAQQQRLTLQRLIAMVEAERTYHQKVLQILDQLESEMMSARQRIEAPPTPSADNSNSMPPPSYEEVNGVYASQVTNGLTDAMGYFLGEVMHQYQAESDVELNLSVGDYVVVRKVTNIGWAEGECKGKAGWFPFGYIEKRDRVLASKVAEVF 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27076547 27083154 + Bda022607.1 Bda06g00963 8545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00963 372 Coils Coil 1 21 - -
Bda06g00963 372 Coils Coil 186 213 - -
Bda06g00963 372 SUPERFAMILY SH3-domain 277 361 IPR036028 GO:0005515
Bda06g00963 372 SMART SH3_2 306 361 IPR001452 GO:0005515
Bda06g00963 372 Gene3D SH3 Domains 299 370 - -
Bda06g00963 372 MobiDBLite consensus disorder prediction 261 286 - -
Bda06g00963 372 ProSiteProfiles Src homology 3 (SH3) domain profile. 303 362 IPR001452 GO:0005515
Bda06g00963 372 PANTHER PROTEIN, PUTATIVE-RELATED 1 372 - -
Bda06g00963 372 Gene3D Arfaptin homology (AH) domain/BAR domain 44 274 IPR027267 -
Bda06g00963 372 Coils Coil 244 264 - -
Bda06g00963 372 Coils Coil 220 240 - -
Bda06g00963 372 MobiDBLite consensus disorder prediction 269 286 - -
Bda06g00963 372 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Bda06g00963 372 PANTHER SH3 DOMAIN-CONTAINING 1 372 - -
Bda06g00963 372 Pfam Variant SH3 domain 310 358 IPR001452 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00963 - - - jre:109006528 627.861
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00963 Bda08g00957 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00827 Bda-Chr1:39057186 Bda06g00963 Bda-Chr6:27076547 2.04E-84 dispersed
Bda06g00963 Bda-Chr6:27076547 Bda07g00951 Bda-Chr7:11044667 2.63E-112 dispersed
Bda09g00465 Bda-Chr9:6065706 Bda06g00963 Bda-Chr6:27076547 2.19E-106 transposed
Bda06g00963 Bda-Chr6:27076547 Bda08g00957 Bda-Chr8:18678618 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00963 Bda_Chr06 FPKM 2.857018 2.484354 0.321618 0.0 0.0 0.0 0.0 0.622746 0.0