Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00968 ATGGATCAGCTGCTACAACCCGAAGCTTTCATTCAAACTACCCCTACGGCCTCAGCTCCGCCTCTCCCTGAGTTTAACGACCCTTCAAATCCATCTCATCCTAATTCAAGCCAAAAGCTTGAGGGAGAGCTGAAGGACACAGCGGCTGCAAGGAAAATTCAGAAGGCAGGCAGAGAAAAATTGAGGAGGGATAAACTAAATGAGCAGTTTATTGAGCTTGGATATGTATTAGATCCTGATAGACCTAAAAATGACAAAGCAACCATTCTTATGGATACCATCCAATTGCTGAAGGATCTGACATCTCAAGTTAATAAACTGAAAGCTGAATACACTACACTGACTGAAGAATCACATGAGTTGACTCAAGAAAAAAATGATCTTAGAGAAGAGAAGGCATCTCTTAGATCTGATATTGAGAATCTTAGTGCTCAGTATCAGCAGCGAGTGAGGAATATGTTTCCTTGGCCGGCTATGGACCCCTCAGTCGTCATGGCTTCTCCCTCTTATCCTTTTCCAGTAGCGATGCCGATGCCTCCCGGGTCAATTCCGATGCATCCATCAATGCAGCCTTACTCCTTCTTTGGGAATCAAAATCCCTGTTCAACATTTGTCCCTTACATACCTTCTAATGCCTTGGTTGAACATCAGCCCATACCTCCATTTGTCCATCCAGGCAGCCAGCCTCGCAACTCTGGCAAACAAGATTCCAAGGGAGAAAGCAGGATTGAGAGAAGTGAAGGATCTAATGAAGTTACCACGGACCTTGAGTTGAAGACTCCAGGATCTACAGCAGAGCAGGGTTCATCGTTCGCACAAAGAAAATGTAAGCAAACTCTGAGCCAGGAAAACATTGCTGCAGAACCGAGTTCTTCGAGTAGATGTTCTTCATCTCGTAGTGTACAAAATAGCTCTTCTAACAGCATACCTGACGGTAGACAGGCTAAGGATTAA 954 44.55 MDQLLQPEAFIQTTPTASAPPLPEFNDPSNPSHPNSSQKLEGELKDTAAARKIQKAGREKLRRDKLNEQFIELGYVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKAEYTTLTEESHELTQEKNDLREEKASLRSDIENLSAQYQQRVRNMFPWPAMDPSVVMASPSYPFPVAMPMPPGSIPMHPSMQPYSFFGNQNPCSTFVPYIPSNALVEHQPIPPFVHPGSQPRNSGKQDSKGESRIERSEGSNEVTTDLELKTPGSTAEQGSSFAQRKCKQTLSQENIAAEPSSSSRCSSSRSVQNSSSNSIPDGRQAKD 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28070388 28072976 - Bda022620.1 Bda06g00968 8550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00968 317 Coils Coil 90 145 - -
Bda06g00968 317 MobiDBLite consensus disorder prediction 235 252 - -
Bda06g00968 317 MobiDBLite consensus disorder prediction 1 20 - -
Bda06g00968 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983
Bda06g00968 317 SMART finulus 56 106 IPR011598 GO:0046983
Bda06g00968 317 Pfam Helix-loop-helix DNA-binding domain 52 100 IPR011598 GO:0046983
Bda06g00968 317 Gene3D - 48 129 IPR036638 GO:0046983
Bda06g00968 317 MobiDBLite consensus disorder prediction 253 317 - -
Bda06g00968 317 MobiDBLite consensus disorder prediction 1 46 - -
Bda06g00968 317 PANTHER TRANSCRIPTION FACTOR BHLH121 24 315 IPR044579 GO:0003700|GO:0055072
Bda06g00968 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 120 IPR036638 GO:0046983
Bda06g00968 317 CDD bHLH_AtILR3_like 55 129 - -
Bda06g00968 317 MobiDBLite consensus disorder prediction 218 317 - -
Bda06g00968 317 PANTHER TRANSCRIPTION FACTOR BHLH121 24 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00968 Bda-Chr6:28070388 Bda13g00632 Bda-Chr13:7301859 3.62E-24 dispersed
Bda06g00968 Bda-Chr6:28070388 Bda07g00338 Bda-Chr7:4458922 1.80E-21 transposed
Bda06g00968 Bda-Chr6:28070388 Bda12g00887 Bda-Chr12:39604560 5.98E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16050 PF00010 HLH 7.00E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00968 - - mnt:21407670 374.785