Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00991 ATGGGATCTATTTGTTGTGTTGCTGCTAAAGATATGAGTCATAGGACTATCAGAAATGTAGCAACTGATAATCCACACAGTAATAATCGTTATTCGCCAAGTTTGAGCTTTCGATGGGATAATCGTGGCCGGGTGGCTGGCGAAGAGACTTCTATTCACTGGTTTTCAGATGGAATGAGCTGCAGTGATAGATCAAAACTCAAGTATAATGCTGAATTTGCATCTGGTGAAGAAAGTTCACTGGAAAATAGCCAGCACGCCTGGTTAAAGTCTCCATCATCAGAAGGAAGTGCACAATCGTTAAGAACTCATGCTCCAGTGAAGGAGCCAGCAGAATCTGGCAGAGACCCCTACCCCTCTCCTGCCAAGCTCTCTCATTCATTCCCTGCAACATCGTCATCCTCAGCGTCCCCTTTGTCTTTTCAAAGTAGCTTACCTCGCAATGTCTCAAAGCCATTAAGATGGACCCACCATTCTCCGAATTCAGCACCCCAGCAGTTACGTCAAGTGTATGATAACCAAAGTTCAGGATTCAAGTCGCCAACTAGCTACTCAGTCTCAGAGGATAGAAGATTCCCGTCTTGGAGCAACGAATTCATTGGGGACTTAGATGAAGGGTCGCCAACCGGTTGGTCGATGGAGGGTCTCTCTGAGCTGATAGCTTCTTCAGAGTCGAGAAGTTGGTCTTTTGACAGTGAGTTGTCTGGGTTTAATTGTGAGAAGATGGGCAGAGCAAGAAATCGGTTTTCTTCTTCTTCCTCTGTTGAGTTGAAAACATGTGGTATTTGCTCCAAATTATTGGCTGAAAGGCCACCATGGTTCAACCACAAGAATATCGTTAATGGTATTTCTGTGGTGGCAGTGCTAACTTGCGGGCATGTTTATCATGCCGAGTGCCTGGAGAGTTTGACACCTGAAAGTAGTAAGTATGAACCAAGCTGCCCTGTTTGTAATGTTGGTGAAAAGCAGGGCCTTAAGTTGAAAGAAAAGGCACTAAAATCCTCCAGTTTGAGTTTGAGGAGTTCCTTGGGAAGGCCTTTCTTAAGAAAAAATTTTTCGTTTGGTTCAAATAGGCCCTTCTCAATGTCGCATAATCAAACGAGAAAGAAAGGTTTCTTCTGGATCAAATCAACTAAAACCTAA 1143 44.01 MGSICCVAAKDMSHRTIRNVATDNPHSNNRYSPSLSFRWDNRGRVAGEETSIHWFSDGMSCSDRSKLKYNAEFASGEESSLENSQHAWLKSPSSEGSAQSLRTHAPVKEPAESGRDPYPSPAKLSHSFPATSSSSASPLSFQSSLPRNVSKPLRWTHHSPNSAPQQLRQVYDNQSSGFKSPTSYSVSEDRRFPSWSNEFIGDLDEGSPTGWSMEGLSELIASSESRSWSFDSELSGFNCEKMGRARNRFSSSSSVELKTCGICSKLLAERPPWFNHKNIVNGISVVAVLTCGHVYHAECLESLTPESSKYEPSCPVCNVGEKQGLKLKEKALKSSSLSLRSSLGRPFLRKNFSFGSNRPFSMSHNQTRKKGFFWIKSTKT 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34076733 34078422 - Bda022709.1 Bda06g00991 8573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00991 380 MobiDBLite consensus disorder prediction 80 101 - -
Bda06g00991 380 MobiDBLite consensus disorder prediction 125 145 - -
Bda06g00991 380 MobiDBLite consensus disorder prediction 80 145 - -
Bda06g00991 380 CDD RING-H2 260 318 - -
Bda06g00991 380 SUPERFAMILY RING/U-box 259 319 - -
Bda06g00991 380 ProSiteProfiles Zinc finger RING-type profile. 260 318 IPR001841 -
Bda06g00991 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Bda06g00991 380 PANTHER BNAA09G43140D PROTEIN 1 334 - -
Bda06g00991 380 PANTHER EXPRESSED PROTEIN 1 334 - -
Bda06g00991 380 SMART ring_2 260 317 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00991 - - - tcc:18607735 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00991 Bda-Chr6:34076733 Bda14g00565 Bda-Chr14:4325862 1.55E-97 dispersed
Bda06g00991 Bda-Chr6:34076733 Bda06g00996 Bda-Chr6:34414770 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00991 Bda_Chr06 FPKM 1.051667 1.442549 0.0 1.61293 2.001187 1.346121 0.0 2.488217 1.280697