Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01042 ATGGCGTATAAGGATTGGAATCATGGCCGATTCAGGCATGGGCATCATCGTCCGAAACAAACATTGAGCACTCGGAAGATTTTCGTTGGTGGCTCTAACCAATGGCGCTATGGTGTTGATTATAACGATTGGGCGATGAAAAATGCTCCATTTTACCTCAACGATACTCTTGTGTTTAAGTATGATCCTCCAAGCAGTACTCCATTTGTCCATAGTGTGTACTTGCTACCCGACTTGTGGAGCTACTGGAACTGTGATTTGGCGAGGGGAAAAATGGTGGCCAATCATTCGGACGGTGCTGGAGACGGGTTTGAGTTTGTGATTAAGCGTTGGCAGCCTTACTACTTTGCCTGCGGTGAGAGGGGCGGCCTTCACTGCCGGAATGGAACCATGAAGTTCTTCGTCATGCCGTCTCTTCCTGGCCGGTTTTAG 432 48.61 MAYKDWNHGRFRHGHHRPKQTLSTRKIFVGGSNQWRYGVDYNDWAMKNAPFYLNDTLVFKYDPPSSTPFVHSVYLLPDLWSYWNCDLARGKMVANHSDGAGDGFEFVIKRWQPYYFACGERGGLHCRNGTMKFFVMPSLPGRF 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36667149 36667676 + Bda022790.1 Bda06g01042 8624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01042 143 PANTHER GLYCINE-RICH PROTEIN-LIKE 3 137 - -
Bda06g01042 143 PANTHER BNAC04G19690D PROTEIN 3 137 - -
Bda06g01042 143 Pfam Plastocyanin-like domain 36 129 IPR003245 GO:0009055
Bda06g01042 143 ProSiteProfiles Phytocyanin domain profile. 25 139 IPR003245 GO:0009055
Bda06g01042 143 SUPERFAMILY Cupredoxins 26 137 IPR008972 -
Bda06g01042 143 Gene3D - 23 137 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01042 - - - tcc:18607894 197.593
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g462 . . Bda06g01042 . . . . . . . Cma02g00440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00446 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004690 1 1 0 1 1 1 4 0 0 0 1 0 2 0 1 2 0 3 0 1 1 4 0 3 2 1 2 1 2 6 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01042 Bda_Chr06 FPKM 62.785156 62.211399 34.992077 35.806469 12.848198 15.557466 13.739742 16.787291 15.368254