Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01045 ATGCAGCAGCAGATGATGATGTACCCTACGCAGCATTATATGGCCTACTCGCAGTTCCCGTATCAGCAGCAAGCTCAGCTTCATCAACAGCAAAAGCAACAGGTTCAGGGGCAGGCTTCAGCGGACGAAGTTAAGACGATCTGGGTCGGCGACCTTCATCATTGGATGGATGAAAACTACCTCCATAGCTGCTTCGCTTACACCGGCGAGGTCTCTTACGTTAAGGTTATACGCAATAAACAGACAGGACAGTCTGAAGGCTATGGATTTATTGAGTTTTATTCGCACCCAATCGCTGAGAAAGTTCTGCAGAACTATAATGGAGCTATAATGCCAAATACAGAGCAGCCTTTTCGTCTTAACTGGGCAACCTTTAGTTCAAATGATAAGAAAATAGACAGTAGCTCTGATTTATCCATATTTGTTGGTGATTTGGCCACAGATGTTACAGATTCTATGTTGCAAGAAACTTTTGGGAGCAGATATTCATCTGTGAAGGGAGCAAAAGTTGTGATTGATGCAAACACGGGCCGTTCGAAAGGTTATGGATTTGTCAGGTTTAGTGATGAAAATGAGAGATCAAGGGCGATGACTGAGATGAATGGAGTGCATTGTTCAAGTAGGCCGATGCGTATTGGTGTTGCTACTCCAAAGAAAGCAGCTGGCTACCAGCAAAATTATTCTTCACAAGCTTTGGTTTTGGCTGGTGGACATGGATTAAATGATTCTGCAGCTCATGGTTCGCAATATGACAGCGAAGCAAATACTACGACTATATTTGTTGGAGGGCTTGATTCAGATGTTAATGATGAAGATCTCAGACAGCCATTCTCTCAATTTGGTGAGGTTGTCTCTGTGAAAATACCTGCTGGAAAAGGATGTGGGTTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGGTGCAATGCAAGGTCTGAATGGAACCATAATCGGTAAGCAGACAGTTCGTCTTTCTTGGGGTAGGAGTCCAGGAAATAAGCAGTTTGACTTGATCACCTATTGGCTCTACCAGTGGAGATCGGAATCCGGGAACCAGTGGAACGGAACCCGCTATTAA 1077 44.1 MQQQMMMYPTQHYMAYSQFPYQQQAQLHQQQKQQVQGQASADEVKTIWVGDLHHWMDENYLHSCFAYTGEVSYVKVIRNKQTGQSEGYGFIEFYSHPIAEKVLQNYNGAIMPNTEQPFRLNWATFSSNDKKIDSSSDLSIFVGDLATDVTDSMLQETFGSRYSSVKGAKVVIDANTGRSKGYGFVRFSDENERSRAMTEMNGVHCSSRPMRIGVATPKKAAGYQQNYSSQALVLAGGHGLNDSAAHGSQYDSEANTTTIFVGGLDSDVNDEDLRQPFSQFGEVVSVKIPAGKGCGFVQFADRKNAEGAMQGLNGTIIGKQTVRLSWGRSPGNKQFDLITYWLYQWRSESGNQWNGTRY 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36790448 36796204 - Bda022796.1 Bda06g01045 8627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01045 358 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 352 - -
Bda06g01045 358 SMART rrm1_1 46 121 IPR000504 GO:0003723
Bda06g01045 358 SMART rrm1_1 258 325 IPR000504 GO:0003723
Bda06g01045 358 SMART rrm1_1 139 213 IPR000504 GO:0003723
Bda06g01045 358 CDD RRM1_SECp43_like 46 126 - -
Bda06g01045 358 Gene3D - 241 334 IPR012677 -
Bda06g01045 358 CDD RRM3_NGR1_NAM8_like 257 327 - -
Bda06g01045 358 SUPERFAMILY RNA-binding domain, RBD 14 130 IPR035979 GO:0003676
Bda06g01045 358 SUPERFAMILY RNA-binding domain, RBD 121 239 IPR035979 GO:0003676
Bda06g01045 358 CDD RRM2_SECp43_like 137 216 - -
Bda06g01045 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 125 IPR000504 GO:0003723
Bda06g01045 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 329 IPR000504 GO:0003723
Bda06g01045 358 SUPERFAMILY RNA-binding domain, RBD 249 340 IPR035979 GO:0003676
Bda06g01045 358 Gene3D - 131 231 IPR012677 -
Bda06g01045 358 Gene3D - 5 130 IPR012677 -
Bda06g01045 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 217 IPR000504 GO:0003723
Bda06g01045 358 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 8 352 - -
Bda06g01045 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 207 IPR000504 GO:0003723
Bda06g01045 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 115 IPR000504 GO:0003723
Bda06g01045 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 322 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01045 - - - tcc:18607905 523.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00562 Bda-Chr1:32626186 Bda06g01045 Bda-Chr6:36790448 3.12E-168 dispersed
Bda02g00635 Bda-Chr2:47252686 Bda06g01045 Bda-Chr6:36790448 1.51E-91 dispersed
Bda06g01045 Bda-Chr6:36790448 Bda08g00827 Bda-Chr8:12514962 0 dispersed
Bda01g01291 Bda-Chr1:48358903 Bda06g01045 Bda-Chr6:36790448 5.69E-07 transposed
Bda06g01045 Bda-Chr6:36790448 Bda08g00793 Bda-Chr8:10909969 2.27E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01045 Bda_Chr06 FPKM 5.332875 6.087707 5.188664 5.048019 10.142859 10.199986 9.505952 5.172741 4.342067