Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01054 ATGTTGGGTGGAAGCGTTTATTGGGGAAGGAGGAAAGCTGATAGTCGCGGGGGAATCGTCATTCTTTTTGCTTGGTTTTCTCTCGAGGAAAGACACTTGAGAAACTATGTGGATTTGTATTCGTCGCTTGGTTGGGATTCCCTTGTTTGCCGAGCTGATTTTCTCAATGCATACTATCCTGACAGGGCCATGTCGTTAGCTTTTATCCTACTTAATGAGCTTGTAGAGGAGCTAAGGCAGAGGCCACGTCCTCTAGTTTTTGTAACCTTTTCTGCTGCTTCCAAGGCTTGCATGTACAAGGTTTTTGAGAATGAATATCGCATTGTCAAAAATTGTGTTTCCGGGCACATCTACGATTCTAGTCCAGTTGAATTTACCAGTGAGATAGGTGCATGCTTTTCTCTGCATCCGACGATTTTAAAAATGATTGGATCATCCAAACTTGTTTCCTGGTTTGCAAAAGGCGTTGCCTCTGGTCTTGATATGGTATCTTTTACCAGACTTGATTTACAACATTCTGAATATTGGAAAACTCTGAGTTCGTCTGTGAATTTTGGTGCTCCATTTCTCTTTTTATGCTCTGAAAAGGATCACCTTGCACCTTATCGTATCATTCAAAGTTTCAGTCAACGAATTCAAGAACTTGGTGGAGATGCTGAGGTTGTAAAATTCAGTGCATCCCCACATGTCGGTCATTATAAAACTTATCCCATTCAGTATAAGGCTGCTGTGAGTTGTTTGCTTGAAAAGGCTGCTTCCGTATATTTGCAAAGAATCTCTCAACTGAAGGAAGAAATCCATGATGAGATGTCAGAGCTAATATGTGACCTTCAAAATGCTGCAGTTAATTCAAATCAGAGCCTCAGAAGGGTTGCCGTTGGTCCTGGTGACCACTTTTTCTTGCCAAGTTCTGCAGAGTCCAATAATGGCGGAGAATCTTCACCGTTCCATGATGAACCGAGAGAAAGATCAAATTATGTTTCGAATCCTCCGAGCATCAGTGCACACAGTGTACTTGGCCAAATCCTTTTTGATGCTTGTGTTCCTAAAAATGTTGAAGGTTGGGACATTAAATTTTGCAGCTCTTTGAATGGACGGCCACTCGCATCTGCTCACAGGCGTTCACCCAACCATGATGTTAAAGGTATTCGTCGGTCTAGATTATAA 1167 42.07 MLGGSVYWGRRKADSRGGIVILFAWFSLEERHLRNYVDLYSSLGWDSLVCRADFLNAYYPDRAMSLAFILLNELVEELRQRPRPLVFVTFSAASKACMYKVFENEYRIVKNCVSGHIYDSSPVEFTSEIGACFSLHPTILKMIGSSKLVSWFAKGVASGLDMVSFTRLDLQHSEYWKTLSSSVNFGAPFLFLCSEKDHLAPYRIIQSFSQRIQELGGDAEVVKFSASPHVGHYKTYPIQYKAAVSCLLEKAASVYLQRISQLKEEIHDEMSELICDLQNAAVNSNQSLRRVAVGPGDHFFLPSSAESNNGGESSPFHDEPRERSNYVSNPPSISAHSVLGQILFDACVPKNVEGWDIKFCSSLNGRPLASAHRRSPNHDVKGIRRSRL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37436023 37438708 + Bda022811.1 Bda06g01054 8636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01054 388 MobiDBLite consensus disorder prediction 372 388 - -
Bda06g01054 388 Pfam Eukaryotic protein of unknown function (DUF829) 113 355 IPR008547 -
Bda06g01054 388 SUPERFAMILY alpha/beta-Hydrolases 13 234 IPR029058 -
Bda06g01054 388 PANTHER DUF829 DOMAIN PROTEIN 3 322 - -
Bda06g01054 388 MobiDBLite consensus disorder prediction 302 329 - -
Bda06g01054 388 MobiDBLite consensus disorder prediction 368 388 - -
Bda06g01054 388 PANTHER UNCHARACTERIZED 3 322 IPR008547 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01054 - - - fve:101300802 526.168
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01054 Bda08g00853 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01054 Bda-Chr6:37436023 Bda08g00889 Bda-Chr8:16044261 0 dispersed
Bda06g01054 Bda-Chr6:37436023 Bda06g01056 Bda-Chr6:37551670 0 proximal
Bda06g01054 Bda-Chr6:37436023 Bda08g00825 Bda-Chr8:12382552 0 wgd
Bda06g01054 Bda-Chr6:37436023 Bda08g00853 Bda-Chr8:14240862 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g434 Blo02g00836 Blo15g00736 Bda06g01054 Bda08g00853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1106 . . . . . . . . . . . . . . . . . . . . Cpe14g00300 Cpe01g00451 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004102 6 1 2 0 0 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01054 Bda_Chr06 FPKM 5.270492 4.937869 11.818056 15.054212 8.517263 5.380319 8.44042 23.731619 21.516071