Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01055 ATGGAGCTCAAACCAGGCTTATCGGCTTTAGTCACCGGAGGAGCTTCTGGAATCGGAAAAGCTCTTGCCCTAGCTCTTGGAAATAAAGGAGTATTTGTGACTGTCGTTGATTTCTCTGAAGAAAAAGGAAGGGAAGTTGCTTCTTCCATTGAAGAAAAGCATATAGAGTTCCATTCGAAGTTAGAATTTCCATGTGCTTTGTTCATAAAATGCGATGTAACAAACTCAAGAGATCTAGCACATGCTTTTGAAAGGCATTTGGCAACATATGGAGGATTGGATATATGTATTAACTGTGCTGGAATTGGCAGTGAAATACCATTCCATAAGGATCAAACATGGAGACGCACTATTGACGTCAATCTGACTGGAGTTATTGAGTGCACTCGCCTTGCGATAAAAGCCATGCAATCTGTTAAAAAAACTGGGGTGATTATCAATATGGGTTCTGCTTCTGGTCTTTATCCAATGTATTTCGACCCTATCTATTCTGCTTCCAAAGGAGGCGTTGTTATGTTTACTAGATCACTTGTTCTTTTCAAACGTCAAGGTATTCGCATCAATGTTCTTTGCCCTGAGTTTGTGGAAACTGACATGGGTTCTAAGATTGACCCCAAATTTGTGAAACTAATGGGCGGCTTTCTTTCAATGGAAATGGTGGTCAAAGGTGCTTTTGAGTTAATTACGGATGAGAGCAAAGCTGGTGCATGCCTCTGGATTACAAATCGTCGGGGCATGGAGTACTGGCCCACTCCCATGGAAGAAAAGAAATACATGCTTCCCTCTGTTGGTTTGAGGAAGAAATCTGTATACAAAATTTTTCCAAATATCCAACTTCCAGAAAGTTATGAAAAAATAGTTGTTCACACTCTGAGTCACAATTTTCGTAATGCAACTAACATAGTGCGGAGTCCATTGAGATTGCCAATTGAACCAAATCATGTTCTTCTTAAAATTATATACGCTGGTGTAAATGCTAGTGATGTAAATTTTAGCTCTGGTCGGTATTTCGGTGGTGGCAAGGACGCTAGCTCCCATCTTCCATTTAATGCTGGTTTTGAGGGAGTGGGAATAATTGCAGCAGTAGGCGATGCTGTCTCTGGTCTACAAATTGGTACTCCGGCTGCAATGATGACATTTGGAAGTTATGCAGAATTCGTTATGGTCCCTTCAAAACACATCCTTCCTGTTACGAGACCAGATCCAGAAGTTGTTGCGATGCTAACGTCAGGGTTGACAGCATCAATTGCCCTGGAAAAGGAGGCAGGGCATATGGAAAGGGGAAAAGTAGTTCTTGTAACTGCTGCTGCTGGAGGGACTGGCCAGTTTGCCGTTCAGCTAGCTAAATTAGCTGGAAATAAGGTTGTTGCAACTTGTGGAGGTAAAGAGAAGGCCAATCTTTTAAAAGATTTGGGAGTGGATCGAGTTATAGATTACAGAGCTGAAAATATCAAAGAAGTTCTGAAAAAGGAGTATCCCAAGGGTGTTGACATCATCTATGAGTCTGTTGGTGGTGACATGTTTGATTTGTGCTTAAATGCTCTGGCTGTCCATGGACGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAACATGGATGGAAACCTCTGAATTACACGGGACTGTGCGAGAAACTTTTGTCCAAAAGTCAAACTGTAGCTGGATTTTTCCTAGTGCAATATAGTCATCTATGGCAACAACATATGGACAAACTAATCGATCTCTACTCCTCGGGACGTCTAAAGGTTTCAATTGATCCCAAAAGATTTTTGGGTCTCAATGCGGTCGCAGATGCAGTTGAGTATCTCCATTCGGGTAAAAGTGTTGGGAAGGTGGTTGTATGCATTGATCCGACCTACAGCAACCAAGTGGCAAAACTTTGA 1890 41.9 MELKPGLSALVTGGASGIGKALALALGNKGVFVTVVDFSEEKGREVASSIEEKHIEFHSKLEFPCALFIKCDVTNSRDLAHAFERHLATYGGLDICINCAGIGSEIPFHKDQTWRRTIDVNLTGVIECTRLAIKAMQSVKKTGVIINMGSASGLYPMYFDPIYSASKGGVVMFTRSLVLFKRQGIRINVLCPEFVETDMGSKIDPKFVKLMGGFLSMEMVVKGAFELITDESKAGACLWITNRRGMEYWPTPMEEKKYMLPSVGLRKKSVYKIFPNIQLPESYEKIVVHTLSHNFRNATNIVRSPLRLPIEPNHVLLKIIYAGVNASDVNFSSGRYFGGGKDASSHLPFNAGFEGVGIIAAVGDAVSGLQIGTPAAMMTFGSYAEFVMVPSKHILPVTRPDPEVVAMLTSGLTASIALEKEAGHMERGKVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKEKANLLKDLGVDRVIDYRAENIKEVLKKEYPKGVDIIYESVGGDMFDLCLNALAVHGRLIVIGMISQYQGEHGWKPLNYTGLCEKLLSKSQTVAGFFLVQYSHLWQQHMDKLIDLYSSGRLKVSIDPKRFLGLNAVADAVEYLHSGKSVGKVVVCIDPTYSNQVAKL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37441991 37477507 - Bda022812.1 Bda06g01055 8637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01055 629 Gene3D - 288 616 - -
Bda06g01055 629 Gene3D - 6 260 - -
Bda06g01055 629 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Bda06g01055 629 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Bda06g01055 629 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Bda06g01055 629 PRINTS Glucose/ribitol dehydrogenase family signature 183 200 IPR002347 -
Bda06g01055 629 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Bda06g01055 629 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Bda06g01055 629 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Bda06g01055 629 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Bda06g01055 629 Gene3D - 406 585 - -
Bda06g01055 629 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 428 449 IPR002364 GO:0008270|GO:0016491
Bda06g01055 629 CDD ADH_SDR_c_like 9 249 - -
Bda06g01055 629 SUPERFAMILY GroES-like 300 431 IPR011032 -
Bda06g01055 629 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 88 627 - -
Bda06g01055 629 SMART PKS_ER_names_mod 293 616 IPR020843 GO:0016491
Bda06g01055 629 CDD Mgc45594_like 282 617 - -
Bda06g01055 629 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 248 IPR036291 -
Bda06g01055 629 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 403 582 IPR036291 -
Bda06g01055 629 Pfam short chain dehydrogenase 9 204 IPR002347 -
Bda06g01055 629 Pfam Zinc-binding dehydrogenase 439 573 IPR013149 -
Bda06g01055 629 Pfam Alcohol dehydrogenase GroES-like domain 313 377 IPR013154 -
Bda06g01055 629 PANTHER BNAA08G02470D PROTEIN 88 627 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01055 - - - jre:108981417 1004.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01055 Bda-Chr6:37441991 Bda14g01140 Bda-Chr14:10560110 1.53E-29 dispersed
Bda12g00520 Bda-Chr12:7952790 Bda06g01055 Bda-Chr6:37441991 1.53E-18 dispersed
Bda06g01055 Bda-Chr6:37441991 Bda06g01057 Bda-Chr6:37557997 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g430 . Blo15g00737 Bda06g01055 . Bpe07g00392 . . Bma12g00464 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1101 Cone8ag1142 . . . . . . . . . . . . . . . . . . . . . Cpe14g00299 Cpe01g00449 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007124 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01055 Bda_Chr06 FPKM 8.280533 8.488336 15.754302 14.697935 8.693238 7.38343 8.861894 27.25176 24.849501