Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01058 ATGTTTCCGTGGAACCTCGCTAAGTCGGCCGAGGAGATGTTTTCCCGGTGGGCTTTGAAGAGGTTGTGCAAGTTTTTGTTGAAGAAGAAGCTGGGGCAGTTCTTGTTGGGAGATATTGATCTCGACCAGCTTGATGTTCAACTCATCGAGGGCACAATTCAACTCAGTGACCTCGCGCTTAATGCTGAATTTCTAAATCAAAAGGCACGCTTATTTTTTACTTTTCATCTATCTGCTGCATCGGTAATCATAAAAGAAGGATCGGTTGGATCCCTTTCAGTAAAAATGCCTTGGAAGGGTAAAGGTTTTGAGGTCGAGGTTGATGAGCTTGAAATTGTGCTTGCACCTCTTCGAATGGAAAATACTCTTACTATTCAAGATGAAACTTTTGGTTCTGCTGAGAAAAATCACCAACATCAAGAGTTGGGATCACGTCATGATGCAACTGAATCTTCTGTAAAACTCACATCTGTTCATGAAGGAGTAAAGACAATAGCAAAGTTGGTGAAGTGGATACTTACTAGTTTTCATGTAACAATTAAGAAGCTGATTATTGCATTCGATCCATTTTCAGAAGAAGATAAAAAGATGACAGGTGGTAAATCAACACTGGTTTTTCGAATTTCAGAAATAGAATGTGGTACTTGTGTTTCTGACTGTGGTAATTCAGATACCAATCCAAAAATTGAGAGCTTTCTTGGAATGAATGAACTAACAAATTTTGTGAAGTTTCATGGCGCTGTACTTGAACTTCTTCAAATAGAGAACGTTGATAATCAGATGAATTTGGACAATGCCACTGAAAGAACCTTGGGTGGTTTGTCTTCTGTTTCTTCGCCATCACATGTTACTATACCAATTTTGTCTGGCAGAATTGGTGGATTTTCTGGAAATTTAAAATTTAGTGTTCCTTGGAAAGATGGTTCCTTTGACATTTGTAAAGTTGATGCAAATGTTTTTATTGATCACGTATATCTCAAACTTCAACTGAGCACAATCAAGCAATTTCTAATCTTATGGGAGGCATATGCGAATTTGAACAAGGAAGGGTCAAGTTATCATGACAAACTGATTGATTCTGCTGCAATTACTTCTGGGAATAATTTTCCATCTTGTGGTGGTTTTCCATCAGATTTCTCTTCATCGACATTGCATGAATCACTAAATGAAGGTCTTCTACATCATTCACATCTCATAGCAGATTGGCTACCATTTTCGGTTAAAGATAGCAGAGAAGAAAATATTGGAGTGGGAGAACTTGATTTTGGGGCAAGTGTGGACCAATTCTTTGAGTGTTTAGATGAAATGAGAAGTTCCCAATCTGCATTTGGAAACAGTGGCATGTGGAACTGGAAAAATTCTGTTTTCAGTGCCATTACTGCAGCATCCAGCCTTGCTTCTGGATCTTTACATATTCCCTCGGGTATGTGCATGTATCAGAAGCACGTTGAAACAAATCTGAAAGCAAATTTTGCTGGACTTTCTATTACACTTTCATTTCATGATGACGACCAGACTAAGTTATTAGATCAGCGAATTAATGGGAGCTCAGAGCAGCATTTTGTGGCTGCGGAGTGTCGTGACATAATTCTTGTTACACAGGTCTCTCTTCAAGAAATGAGGTTTCATGGGACAGTTGAGTATATGGAGGTTTCTGATTATATAAGCTATAAAGAAAATGGCACAGACTTCAGGTTTTTGATTCAACATCTCCAAGCTAATGTTCAGGATGCCCTCCCTCCACTTCCCGTGTCATTCAATGATCATGATACGGATTTAGTTAATGATTCAGTGTTTTCAAATTTTCTACTTGGTAACAGCGTTGATGCCACAAAAGTAACGTTGCTTAAAACTTCTGGTATCACCTCTTGTCAAGTAAATGTCATGACAAGTTCCCAAGATGAAAATTCCAAATTGTCAAATTCATTTTCATTGAAACTGTCACCCTTTGTTCTATGGGTTAATTTTCCCTTAATAAGCACCGTACTGGATTTTCTGAAGAAAATTGAAAAATATGTAGTGTTGAATGAGGAAAAGAATGTCTTTTCATCCAAGGCTTTCCAGAAAAATCATGGAACATGTGAAAAGGATGTTGAAAGAAATCCCGTTCATGTGAAAACTTTAACTGCAAAAAGATTTCTGGGAGATATATTTATTTCAAATGCAAGGGTAATACTATGTTTCCCATTTGAAAGTGGCCAGAGCATGAGGAATTATAGTTCATGGGAGCAGTTTATTGCTCTTGATTTTTCTTCACCTCCGGATTTGGACAAGGGAGTAAGTCAAGAGCGTGATTTGTCGCCAGAATCAAGTTTGCGGAAACAATATTTAACAGCTGCAAAGGCTTTGCATTTGAATGTTGGAAATCTCGATGTTTTCTTAATAACTCCAATTCTGGACGGAGCTAAAGTTTACTTTGATAAGATGTTGACACAGAAATTTGTTGCTCATAACATTCTTTCTATCATGAACAACAGAAGTTGTAGTCCTGGCATTACAATGTTTTGGCAGGAGGGTCATGTTACAGGTCCATGGATAGCAAAGAAGGCAAGGTCTTTAGCTAGAGACGAGTCACGGAGCAGATATAAATTTGTTGGAAAAGGTTATGAATTTACTTCTGCATCAGCTGTGAAAGATATGAAAGAGTCATATTCTCAAACTCGACAAGAAATGATTTTGAGTTCCACTCTGGTCCTTCATTTTTCACTTCATCTTGTTAAGATTCATTTAAACAGTTTCCAGTATAAAGGTGTTAGTTGTCTATTGAATCAGTTGATAAAAGAGTTCTCTATTGTTGCCTGTGATGCAGCAGATACTGTAAAACAAGTTTCTCCTTCTCAGAAATCTATTGTTGTGGACTGTGATTGTGTGGAAATCTCAATTAATCCAGATGTAAAGGATAATATTAAGAGTTCTATTCAGAAAGAGCTTCCTGGATCGTGGTATCATCTTAAACTAGAAGTTCAGAAATTTGAGCTAATGTCTGTCTCAGACGTAGGAGGTATTAAAGATGCCAATTTCTTTTGGCTGGCTCATGGTGAAGGAAAACTGATGGGTTGTATCACAGGAGTTCCTGATCATGCGTTTCTTTTAATCTCGTGTAGCAACACTACTTTAAAGCGTGGGAATGGAGAAGGTTCAAATGTGTTGTCATCAAGACTGGCTGGTTCTAATATCATACACATGTTGGACTCCGAGAGTGGCCATGGTTACACAACAATTAATCTAAGATGTATGACATTTGTGGCGGTAGGTGGTAGGCTGGATTGGTTGGATACCATTTCCTCTTTTTTCGCACCAACCCAACAAGTAACAGAAAAAACTGTGCAAAGGGAGAATAAAAAAGAATCTTCTGGAGTTACTTTTTTTCTTATCTTGGTTGATGTTGGATTGAGCTATGAACCTTACTTAAATAACTTGTTGGTCAGTAGTGAACTTCATTGTTTAAAGTCTAGTTGTTCAATCTCTAACCAAGGTTTGGGTGAGAAATATGTTGCTTGTCTACTGGCTGCATCTTCTCTGACTCTTTCTAATGCAACTATGGAAGACATAGTTAAAGATGATTACAGAATTGCAGTACAGGATGTTGGGCTTCTTATAAAGGGTTTGTCAATGCCTGAGTATCTTGGTGGCACTTACAGTGTTGAACATCTTGCCAAGATTGGCTATGTGAAAGTTGCTCGAGAGGCACTCATTGAAGCAACAATGAAAACTAATTGTTCTAGTGGACTTCTGTGGGAGGTGGAATTTTCAAAATGTCATATTTTTATGGAAACTTGCCCTGATACAACCTCTGGCATGATTCGTTTAGCTGCTCAGCTTCAGCAACTATTTGCTCCAGAGCTGGAGGAATCAGTTTTGCACTTACAGGCAAGATGGAATAATGTTCAGCAGGCACAAGAGAGCGAGCTTTTTGACAATGAAGCATCTTCTCCTCATTCTAGTGTCGATAAAGAAACTGATGCTTGTTTAGTTGGCTTGATGAATGAGATATGTGAAGATGCATTTCTATCAGAAAAGAACCAAAATTTGAAATATGATTCCGCCGAAGTGAAAGTTTGTAATCCACCTGATGAAACTATTCCCATGGAGATTTCTTTCCAGAGTCATGAAACTCTCAACAGTTACTGCCCTGACATTCCCTTCTTTACTGCACCAGAATTGAAAAGGAGTGAAGTATTATCTACTCCGGAATGTTCCTATCCTGAGTTCATTGAAGAATATTGTTTGTCAGAGCTGTGCTCACTGTCAGAGTTATCTCTTTGTAGGCCGATGTTGCGTGATAGCTCTAAATCTAGAAATGAAGATCTGGGAGAAGAAATTAATGGATGGTATGGGGATATGTCACTAACAATTGTGGAAAACCACATTGATGAAAGTTGTATTAGTGAACAATCTGTTGAAGAGGATCTTTCATCCAGTGAAAGTAGAAAGATCTTCAATTTTGGAAAGGCTGCTGGATGCGTACTTTTTACAAATATCGATATCAGCTGGAGAATGTATGCTGGCTCTGACTGGAATGGCAGCGGAGAAAATGGAAAGCAAACCATAAAATTTTGCAAGAGGGATGTAAATGCTTTTCAAGATCTCCATCTTTATGACAAAAGTAAAGATGCTCCTTGGAAACTGATGATAGGATACTACAACTCGAAGGATCACCCTCGAGAATCTTCTTCTAAAGCATTTAAGATGGAATTAGAAGCTATCAGACCGGATCCTTCAACTCCTCTTGAGGAATATAGGTTACATGCGTCTTTCCTTCCTATACTATTGCATCTTCACCAACAGCAACTTGATTTTCTCATTAACTTTTTTGGGAATAAAAGCACATCAATGGACCAATCGTCTAGTCATCTTCAAAGTTCAGATAATTTAAAATCATTGCCAATTGCATGTAGAAGTCTTGCAGGGCATACTGTTGTGGAAGAGGCACTACTCCCGTATTTTCAGAAATTTGATGTAAGACCTTCTGTTGTTCGAGTTGACTACAGTCCCAGCCACGTTGATTTAGCTGCATTAAGAGGTGGAAAGTATGTAGAACTTGTAAACCTTGTTCCTTGGAAGGGAGTTGAATTACAACTAAAGCATGTTCATGCTGTTGGCATATACGGATGGAGCAATGTATGTGAAACAGTTGTTGGAGAGTGGTTGGAAGATATTTCTCATAATCAGATCCATAAAATATTGGGAGGTCTTCCAACCATCCGATCATTGGTTGCAGTTGGGGCTGGTGCTTCAAAGCTGGTTTCTTTGCCAGTTGAGAGCTACAGGAAGGATAGAAGAATACTCAAGGGGATGCAAAGAGGTACTATTGCATTTCTCAGGAGTATTTCTCTTGAAGCTGTTGCATTGGGAGTACATCTGGCTGCTGGGGCTCATGACATTTTGGTTCAAGCAGAATATATAGTAACAAGTAGTCCATCGGTGACTGTCCGATCTAAAGCAAAAGCAAATGCTAGATCTAATCAACCTAAAGATGCCCAAGAAGGAATACAAAAGGCATATGAAAGCCTTAGCGATGGCCTTGGTAAGTCTACCTCCGCCTTGGTTCGGACACCTTTGAAAAAATACCAACGTGGAGCAGGTGCGGGATCTGCTTTAGTTACCGCTGTTCGAGCACTGCCGACAGCTGCTATAGCTCCGGCATCTGCATGTGCAAGTGCCTTGCATTATGCTTTTCTAGGCTTTAGAAATAGCCTTGATCCCGACCGCAAAAAAGAATCCATTGAGAAATATTTGGGTCCCACTGAATCATGGGACCATAATTAA 5769 38.97 MFPWNLAKSAEEMFSRWALKRLCKFLLKKKLGQFLLGDIDLDQLDVQLIEGTIQLSDLALNAEFLNQKARLFFTFHLSAASVIIKEGSVGSLSVKMPWKGKGFEVEVDELEIVLAPLRMENTLTIQDETFGSAEKNHQHQELGSRHDATESSVKLTSVHEGVKTIAKLVKWILTSFHVTIKKLIIAFDPFSEEDKKMTGGKSTLVFRISEIECGTCVSDCGNSDTNPKIESFLGMNELTNFVKFHGAVLELLQIENVDNQMNLDNATERTLGGLSSVSSPSHVTIPILSGRIGGFSGNLKFSVPWKDGSFDICKVDANVFIDHVYLKLQLSTIKQFLILWEAYANLNKEGSSYHDKLIDSAAITSGNNFPSCGGFPSDFSSSTLHESLNEGLLHHSHLIADWLPFSVKDSREENIGVGELDFGASVDQFFECLDEMRSSQSAFGNSGMWNWKNSVFSAITAASSLASGSLHIPSGMCMYQKHVETNLKANFAGLSITLSFHDDDQTKLLDQRINGSSEQHFVAAECRDIILVTQVSLQEMRFHGTVEYMEVSDYISYKENGTDFRFLIQHLQANVQDALPPLPVSFNDHDTDLVNDSVFSNFLLGNSVDATKVTLLKTSGITSCQVNVMTSSQDENSKLSNSFSLKLSPFVLWVNFPLISTVLDFLKKIEKYVVLNEEKNVFSSKAFQKNHGTCEKDVERNPVHVKTLTAKRFLGDIFISNARVILCFPFESGQSMRNYSSWEQFIALDFSSPPDLDKGVSQERDLSPESSLRKQYLTAAKALHLNVGNLDVFLITPILDGAKVYFDKMLTQKFVAHNILSIMNNRSCSPGITMFWQEGHVTGPWIAKKARSLARDESRSRYKFVGKGYEFTSASAVKDMKESYSQTRQEMILSSTLVLHFSLHLVKIHLNSFQYKGVSCLLNQLIKEFSIVACDAADTVKQVSPSQKSIVVDCDCVEISINPDVKDNIKSSIQKELPGSWYHLKLEVQKFELMSVSDVGGIKDANFFWLAHGEGKLMGCITGVPDHAFLLISCSNTTLKRGNGEGSNVLSSRLAGSNIIHMLDSESGHGYTTINLRCMTFVAVGGRLDWLDTISSFFAPTQQVTEKTVQRENKKESSGVTFFLILVDVGLSYEPYLNNLLVSSELHCLKSSCSISNQGLGEKYVACLLAASSLTLSNATMEDIVKDDYRIAVQDVGLLIKGLSMPEYLGGTYSVEHLAKIGYVKVAREALIEATMKTNCSSGLLWEVEFSKCHIFMETCPDTTSGMIRLAAQLQQLFAPELEESVLHLQARWNNVQQAQESELFDNEASSPHSSVDKETDACLVGLMNEICEDAFLSEKNQNLKYDSAEVKVCNPPDETIPMEISFQSHETLNSYCPDIPFFTAPELKRSEVLSTPECSYPEFIEEYCLSELCSLSELSLCRPMLRDSSKSRNEDLGEEINGWYGDMSLTIVENHIDESCISEQSVEEDLSSSESRKIFNFGKAAGCVLFTNIDISWRMYAGSDWNGSGENGKQTIKFCKRDVNAFQDLHLYDKSKDAPWKLMIGYYNSKDHPRESSSKAFKMELEAIRPDPSTPLEEYRLHASFLPILLHLHQQQLDFLINFFGNKSTSMDQSSSHLQSSDNLKSLPIACRSLAGHTVVEEALLPYFQKFDVRPSVVRVDYSPSHVDLAALRGGKYVELVNLVPWKGVELQLKHVHAVGIYGWSNVCETVVGEWLEDISHNQIHKILGGLPTIRSLVAVGAGASKLVSLPVESYRKDRRILKGMQRGTIAFLRSISLEAVALGVHLAAGAHDILVQAEYIVTSSPSVTVRSKAKANARSNQPKDAQEGIQKAYESLSDGLGKSTSALVRTPLKKYQRGAGAGSALVTAVRALPTAAIAPASACASALHYAFLGFRNSLDPDRKKESIEKYLGPTESWDHN 1922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37612485 37626914 + Bda022818.1 Bda06g01058 8640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01058 1922 Coils Coil 249 269 - -
Bda06g01058 1922 Pfam Autophagy-related protein C terminal domain 1819 1912 IPR015412 -
Bda06g01058 1922 Pfam Autophagy-related protein 2 CAD motif 1213 1281 IPR026885 -
Bda06g01058 1922 Pfam N-terminal region of Chorein or VPS13 19 126 IPR026854 -
Bda06g01058 1922 PANTHER AUTOPHAGY-RELATED 2, ISOFORM A 13 1912 IPR026886 GO:0006914|GO:0030242
Bda06g01058 1922 PANTHER AUTOPHAGY-RELATED 2, ISOFORM A 13 1912 IPR026849 GO:0006914
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01058 K17906 ATG2; autophagy-related protein 2 - jre:109002329 1855.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01058 Bda-Chr6:37612485 Bda06g01060 Bda-Chr6:37686464 3.68E-32 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g429 . Blo15g00739 Bda06g01058 . Bpe07g00391 . . Bma12g00463 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00444 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008445 2 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01058 Bda_Chr06 FPKM 0.0 0.21519 0.0 0.0 0.0 0.0 0.0 0.0 0.0