Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01065 ATGAAGGTCTTTGATATCAATGGAAACACTCTCTCTCTTGCCCTTTTTACTGATGTCACCAATGCTAAGGACCTCCTTGATTCCATGCAAGCCGGGACGTTGGAGCCAGAAGCTGCATTTCTCAATGCTTCACTCATTCCAGATGTATTTCCAGTTCTGGCTGCAGCCCATAAAACACTTGTAGCCAAATCAAGGGAGTCGCTCACAACTCGCACTCCTCATTCAGAGCTAGTTTACAATTATTCTGGATCTAAGCATATCACGGAATCTTTGAAAAGATGTGGAATTTCAGAAAGCTCGACTTACGTCCTTGCTGCTCGTTTTAATAGTTCTCCCGACGAGATGAAAGCCGTGGAGAAACTTGTACACGGTAAACAAGTTGAATTAGAGGAACTGGCAGAAAGAGCAAACGTTGCTCAAATACAAAAGCATTTTAAAATAACTGTGCTTGAGGTGGAGATATCCTCGCTTTCTGATGCCATTACATGCCGAATCGCAGCTCGTGATGCCTTG 513 43.66 MKVFDINGNTLSLALFTDVTNAKDLLDSMQAGTLEPEAAFLNASLIPDVFPVLAAAHKTLVAKSRESLTTRTPHSELVYNYSGSKHITESLKRCGISESSTYVLAARFNSSPDEMKAVEKLVHGKQVELEELAERANVAQIQKHFKITVLEVEISSLSDAITCRIAARDAL 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37815373 37817552 + Bda033714 Bda06g01065 8647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01065 171 Gene3D CGI121/TPRKB 2 171 IPR036504 -
Bda06g01065 171 SUPERFAMILY PF0523-like 6 148 IPR036504 -
Bda06g01065 171 PANTHER CGI-121 FAMILY MEMBER 4 171 IPR013926 -
Bda06g01065 171 Pfam Kinase binding protein CGI-121 16 169 IPR013926 -
Bda06g01065 171 Coils Coil 115 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01065 K15901 TPRKB, CGI121; EKC/KEOPS complex subunit TPRKB/CGI121 - cit:102615258 281.952
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g420 . . Bda06g01065 . Bpe07g00385 . . Bma12g00457 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1095 Cone8ag1137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009840 1 1 0 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 5 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01065 Bda_Chr06 FPKM 1.037441 1.348011 1.746629 1.018114 1.858921 1.410512 1.574965 1.26298 1.46847