Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01072 ATGGGTATTGCTGCCAATCATAGGGGCTCGAGAACTATAACGAACCAGGGCAGCTTGTTCGTACAAAATGGCGTTCACACGACGGCGCAGAAAAAATGGACGAATCTGATGCCTCTGGTTGTAGCCCTTGTTGTTATTGCCGAAATTGCCTTTCTGGGTCGCCTCGACATTGTCAAAAATGCTGCGTTGGTCGATTCCTTGGCCGACCTATTCTATCAGTCGCCACCTTCGCGGGAGATGTTGCCTGGTGATTTCAATTCTGGATCTACTCTCGGCGATGAGAATGTTGAATTGCAAAGCTGCGAGGAGTGGTTAGAGAAAGAAGACGCTGTTGTGTATTCTAGAGACTTCGGGAAAGAACCCATCTTAGTTTCTGGTGCTGAGAAGGAGTGGAAATCTTGTGCTGTGGGGTGTGAATTTGGATTTAATCCTGATAAGAATCTTGATGCTGCATTTGGTTTTGGAGGGGGAACATATAGTGTAATCCTTTCTATGGAATCGGCCAAGTACTATCCGGAGAATGATATTGCATTTGCACGACGGAAAGGTTATAGTGTTATAATGACCACTAGTCTCTCGTCAGATGTTCCTGTTGGATATTTTTCATGGGCTGAGTATGATATCATGGCACCAGTGCGGCCAAAGACTGAGAAGTCCCCTGCAGTTGCTTTTATTTCAAATTGTGGTGCTCTTAACTTTCGGTTGCAAGCTCTTGAGGCTCTTGAAAAGCTGAAAGTCAAGATCGATTCTTATGGACGTTGCCACAGAACTCATGATGGCCAAGTGGATAAGGTGGAGACTCTTAAGCGATATAAATTTAGCCTGGCATTTGAAAACTCCAACGAGGAGGATTATGTCACTGAGAAATTTTTCCAATCTCTTGTGGCAGGAACGATTCCGGTTGTGGTTGGAGCGCCAAATATAGAAGATTTTGCTCCTTCTCCTGGTTCGATTTTACATATTAAGGAACTGTCAGATGTCGATCGAGTTGCAAAATCCATGAAGTATCTTTCGGAAAATCCAGATGCATATAATCAGTCGATGAGGTGGAAATATGAAGGCCCATCTGATTCTTTCAAGGCTCTAGTGGACATGGCAGCTGTTCACTCATCATGCCGCCTTTGCATTCACTTGGCGACTTTGATTCGTGACAAAGAAGAAAAGAGCCCCGCCTTTAAGAAACGCCCTTGCAAGTGTCTCAGAGGCTCGGAAACGGTTTACCATTTATTCATCAGAGAAAGGGGGAGGTTTGATTTGGAGTCCATTTTCTTGAGGTCCGGAAATTTGAGTTTAGAGGCTCTACGGTCAGCAGTGGTCGAAAAGTTCAGTTCTCGAAAGCATACTCCGGTATGGAAGGAGGAAAGGCCAGAAAGCATAAGGGGTGGGGATGAGCTGAAAGTGCATAGAATATATCCTGTGGGTTTGACTCAAAGACAGGCTTTGTATACCTTTAGATTTGAACTGGATTCTGATCTCAGAAACCATGTGGAAAGCAATCCTTGTGCAAAGCTTGAAGTCATCTTTGTTTAG 1530 44.51 MGIAANHRGSRTITNQGSLFVQNGVHTTAQKKWTNLMPLVVALVVIAEIAFLGRLDIVKNAALVDSLADLFYQSPPSREMLPGDFNSGSTLGDENVELQSCEEWLEKEDAVVYSRDFGKEPILVSGAEKEWKSCAVGCEFGFNPDKNLDAAFGFGGGTYSVILSMESAKYYPENDIAFARRKGYSVIMTTSLSSDVPVGYFSWAEYDIMAPVRPKTEKSPAVAFISNCGALNFRLQALEALEKLKVKIDSYGRCHRTHDGQVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIEDFAPSPGSILHIKELSDVDRVAKSMKYLSENPDAYNQSMRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATLIRDKEEKSPAFKKRPCKCLRGSETVYHLFIRERGRFDLESIFLRSGNLSLEALRSAVVEKFSSRKHTPVWKEERPESIRGGDELKVHRIYPVGLTQRQALYTFRFELDSDLRNHVESNPCAKLEVIFV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38053311 38058866 + Bda022835.1 Bda06g01072 8654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01072 509 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 106 384 - -
Bda06g01072 509 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 30 487 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bda06g01072 509 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 218 380 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bda06g01072 509 PANTHER BNAA06G03030D PROTEIN 30 487 - -
Bda06g01072 509 Gene3D - 176 358 IPR038577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01072 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - zju:107427081 764.607
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01072 Bda08g00885 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01072 Bda-Chr6:38053311 Bda08g00821 Bda-Chr8:12300237 0 dispersed
Bda06g01072 Bda-Chr6:38053311 Bda08g00868 Bda-Chr8:15202789 0 wgd
Bda06g01072 Bda-Chr6:38053311 Bda08g00786 Bda-Chr8:10643739 0 wgd
Bda06g01072 Bda-Chr6:38053311 Bda08g00832 Bda-Chr8:13119921 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT1G14080 56.8 3.6e-156 548.5
Bda07g01477 . 2 472 Xyloglucan Fucosyltransferase1 AT1G14100 56.3 4.1e-157 551.6
Bda07g01477 . 4 475 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.6e-139 493.0
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 1.5e-191 666.0
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 4.0e-189 657.9
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.1 6.8e-189 657.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 2.0e-188 655.6
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT1G49710 60.7 1.9e-186 649.0
Bda08g00832 . 5 384 Xyloglucan Fucosyltransferase1 AT1G49710 69.7 8.5e-155 543.9
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT1G49710 74.0 3.0e-152 535.4
Bda13g01450 . 1 335 Xyloglucan Fucosyltransferase1 AT1G71990 57.0 1.5e-122 436.4
Bda07g01477 . 6 471 Xyloglucan Fucosyltransferase1 AT2G03210 61.3 5.1e-177 617.8
Bda07g01477 . 1 469 Xyloglucan Fucosyltransferase1 AT2G03220 67.4 2.2e-193 672.2
Bda07g00197 . 5 396 Xyloglucan Fucosyltransferase1 AT2G03220 53.5 2.7e-122 436.0
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15350 52.0 2.1e-145 512.7
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 1.7e-142 503.1
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15390 53.7 5.0e-150 528.1
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 3.5e-190 661.4
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.6 4.3e-188 654.4
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 2.2e-187 652.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.5 2.2e-187 652.1
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT3G19280 60.3 9.0e-186 646.7
Bda08g00832 . 1 384 Xyloglucan Fucosyltransferase1 AT3G19280 71.0 4.2e-159 558.1
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT3G19280 75.9 7.5e-156 547.4
Bda07g01477 . 6 471 Xyloglucan Fucosyltransferase1 AT2G03210 61.3 5.1e-177 617.8
Bda07g01477 . 1 469 Xyloglucan Fucosyltransferase1 AT2G03220 67.4 2.2e-193 672.2
Bda07g00197 . 5 396 Xyloglucan Fucosyltransferase1 AT2G03220 53.5 2.7e-122 436.0
Bda07g01477 . 6 471 Xyloglucan Fucosyltransferase1 AT2G03210 61.3 5.1e-177 617.8
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15390 53.7 5.0e-150 528.1
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 1.7e-142 503.1
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT1G14080 56.8 3.6e-156 548.5
Bda07g01477 . 2 472 Xyloglucan Fucosyltransferase1 AT1G14100 56.3 4.1e-157 551.6
Bda07g01477 . 4 475 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.6e-139 493.0
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15350 52.0 2.1e-145 512.7
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 3.5e-190 661.4
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.6 4.3e-188 654.4
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 2.2e-187 652.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.5 2.2e-187 652.1
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT3G19280 60.3 9.0e-186 646.7
Bda08g00832 . 1 384 Xyloglucan Fucosyltransferase1 AT3G19280 71.0 4.2e-159 558.1
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT3G19280 75.9 7.5e-156 547.4
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 1.5e-191 666.0
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 4.0e-189 657.9
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.1 6.8e-189 657.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 2.0e-188 655.6
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT1G49710 60.7 1.9e-186 649.0
Bda08g00832 . 5 384 Xyloglucan Fucosyltransferase1 AT1G49710 69.7 8.5e-155 543.9
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT1G49710 74.0 3.0e-152 535.4
Bda13g01450 . 1 335 Xyloglucan Fucosyltransferase1 AT1G71990 57.0 1.5e-122 436.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01072 Bda_Chr06 FPKM 11.725888 9.332746 2.865722 2.810513 6.322075 7.044554 8.171599 5.347819 5.799466