Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01126 ATGGCTCCGACTACGCCGCTCGCTGCTTTTTCCGATGAGAAGCTGCTGAATCAGAAATTTGTCAGGGACGAAGACGAGCGCCCTAAGGTCGCCTACAATCAATTCAGCGATGTTATACCCATCATCTCCCTCGCTGGAATTGACGAGGTCGATGGCCGGAGGGCCGATATTTGCCGGAAGATTGTTGACGCTTGCGAGGATTGGGGTGTTTTCCAGGTGATTGATCATGGCGTCGATGCGAAACTGATTTCCGAAATGACTCGTCTTGCTAGAGAGTTCTTCGCTTTACCCTCAGAGGAGAAGCTCCGATTTGACATGTCCGGCGGCAAGAAGGGGGGGTTTATCGTCTCCAGCCACCTACAGGGAGAAGCAGTTCAAGATTGGCGCGAAATCGTGACTTACTTCTCATACCCAATCCGGCACCGGGATTACTCGAGATGGCCGAACAAGCCGGAGGGATGGGTGGAAGTGGCGAAACAATACAGCGATGATTTGATGGGGCTTGCGTGCAAGCTCTTGGAGGTGTTATCCGAAGCCATGGGGTTAGAGAAAGAAGCTCTGACCAAAGCTTGCGTCGATATGGACCAGAAGGTGGTGGTAAATTACTACCCGAAATGCCCCCAGCCGGACCTTACCCTCGGACTGAAGCGTCACACGGATCCAGGTACTATCACCCTCTTACTCCAAGATCAGGTGGGTGGGCTTCAGGCCACCCGCGACGGCGGAAAGTCGTGGATCACCGTCCAGCCTGTCGACGGGGCATTTGTTGTCAATCTCGGCGATCATGGCCACTATCTTAGCAATGGGAGATTCAAGAATGCGGATCATCAAGCAGTGGTGAACTCAAACTACAGCAGATTGTCAATAGCCACATTCCAGAACCCAGCGCCAGAGGCTACTGTCTACCCACTGGCAGTGAGGGAGGGAGAGAAGCCTGTGCTAGATGAACCCATGACCTTCTCAGAGATGTACAGGAGGAAGATGAGCAAGGACCTTGAGCTTGCCAGGCTGAAGAAGCTCGCCAAAGAGCAGGAAGTGAAAGAGCAGCTCGATAAAACTAAGCTTGAATCCAAATCCAACGACGAGATCTTTGCTTAG 1098 52.55 MAPTTPLAAFSDEKLLNQKFVRDEDERPKVAYNQFSDVIPIISLAGIDEVDGRRADICRKIVDACEDWGVFQVIDHGVDAKLISEMTRLAREFFALPSEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIRHRDYSRWPNKPEGWVEVAKQYSDDLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKSWITVQPVDGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNYSRLSIATFQNPAPEATVYPLAVREGEKPVLDEPMTFSEMYRRKMSKDLELARLKKLAKEQEVKEQLDKTKLESKSNDEIFA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40125434 40126800 + Bda022922.1 Bda06g01126 8708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01126 365 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 10 345 - -
Bda06g01126 365 MobiDBLite consensus disorder prediction 346 365 - -
Bda06g01126 365 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 191 295 IPR005123 -
Bda06g01126 365 Pfam non-haem dioxygenase in morphine synthesis N-terminal 39 148 IPR026992 -
Bda06g01126 365 SUPERFAMILY Clavaminate synthase-like 11 330 - -
Bda06g01126 365 Gene3D - 8 334 IPR027443 -
Bda06g01126 365 Pfam 2OG-Fe(II) oxygenase superfamily 196 294 IPR044861 -
Bda06g01126 365 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 10 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01126 K00475 F3H; naringenin 3-dioxygenase [EC:1.14.11.9] - csin:114306386 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01126 Bda-Chr6:40125434 Bda11g01837 Bda-Chr11:53591140 0 dispersed
Bda06g01122 Bda-Chr6:39917782 Bda06g01126 Bda-Chr6:40125434 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01126 Bda_Chr06 FPKM 2.70522 2.142425 7.886836 8.391559 2.125874 2.533916 2.484119 4.818368 4.466243