Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01129 ATGCCGGAATCTAATCGCCAAGTTTCATTGTTCGGGTCATCCAGACCTATGAATAATAACGAAGATAACAACTGTACGTTACAATCCCAAGATGAAGACGAAGACGACGATGTGACGGGAGGAGAAGAATCCATAGACGATCCTCAGTTACGCTTCGAGGGTGGTGGCGGTGTAGATGAATCTGTCACAGTGTTTTCTGGCGCTCAAAATACTGCTCCTTGTAGTACTGTTTACGGTCCTGCTTCGGATTATCACCCAGCTACCGGAAATGGCAGCTCTGACCAGCTGACGCTTTCCTTTCAAGGCGAAGTTTATGTGTTTGATGCTGTTTCGCCTGATAAGGTGCAAGCCGTGCTTTTACTTTTGGGTGGATATGAAATTCCCTCTGGTATTCCTGCTGTGGGATCTGCCCCTCTTAGTCAACGGGTTACAAGTGACTTTCCCGTAAGGTCAATTCAACCACAGAGAGCGGCTTCGTTAAGTCGATTTCGAGAGAAAAGAAAAGAGAGGTGTTTCGATAAGAAAATACGTTATAATGTGCGTAAAGAAGTAGCACTCAGGATGCAGCGTAACAAAGGCCAGTTTGCATCATCTAAAGCTAGTTCTGATGAAGCCGGCTCGGCTTCTTCAATGTGGAGTCCGGGACAGGGTGTTGGACAAGATGAGAACATGCAGGAAACTTTATGCACCCACTGTGGAATCAGTTCAAAGTTTACTCCAATGATGCGACGGGGCCCATCTGGCCCTAGAACTTTATGCAATGCTTGCGGGCTCAAGTGGGCAAATAAGGGAGTGCTAAGAGATCTTTCTAAAGTTCCGAAGACCAATAGCCAGGATCCTTCTCTTAAAGATCCAGAGCAGGTTGCTTAA 870 46.44 MPESNRQVSLFGSSRPMNNNEDNNCTLQSQDEDEDDDVTGGEESIDDPQLRFEGGGGVDESVTVFSGAQNTAPCSTVYGPASDYHPATGNGSSDQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGSAPLSQRVTSDFPVRSIQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRNKGQFASSKASSDEAGSASSMWSPGQGVGQDENMQETLCTHCGISSKFTPMMRRGPSGPRTLCNACGLKWANKGVLRDLSKVPKTNSQDPSLKDPEQVA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40159870 40165020 + Bda022925.1 Bda06g01129 8711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01129 289 ProSiteProfiles Tify domain profile. 89 124 IPR010399 -
Bda06g01129 289 MobiDBLite consensus disorder prediction 1 52 - -
Bda06g01129 289 PANTHER GATA TRANSCRIPTION FACTOR 18 17 287 - -
Bda06g01129 289 SMART tify_2 89 124 IPR010399 -
Bda06g01129 289 MobiDBLite consensus disorder prediction 27 43 - -
Bda06g01129 289 Pfam CCT motif 156 198 IPR010402 GO:0005515
Bda06g01129 289 MobiDBLite consensus disorder prediction 269 289 - -
Bda06g01129 289 ProSitePatterns GATA-type zinc finger domain. 229 256 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 Gene3D - 219 280 IPR013088 GO:0006355|GO:0008270
Bda06g01129 289 CDD ZnF_GATA 229 274 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 Pfam tify domain 92 123 IPR010399 -
Bda06g01129 289 SMART GATA_3 223 281 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 MobiDBLite consensus disorder prediction 1 26 - -
Bda06g01129 289 ProSiteProfiles GATA-type zinc finger domain profile. 223 279 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 PANTHER GATA TRANSCRIPTION FACTOR 28 17 287 IPR045280 GO:0006355
Bda06g01129 289 MobiDBLite consensus disorder prediction 271 289 - -
Bda06g01129 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 276 - -
Bda06g01129 289 Pfam GATA zinc finger 229 265 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Bda06g01129 289 MobiDBLite consensus disorder prediction 192 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01129 - - - jre:108983906 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01129 Bda-Chr6:40159870 Bda11g00806 Bda-Chr11:7985592 1.68E-86 dispersed
Bda06g01129 Bda-Chr6:40159870 Bda03g00450 Bda-Chr3:3847408 4.45E-87 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00806 CCT 16 264 Tify Gene Family AT4G24470 53.3 1.8e-62 236.5
Bda03g00450 CCT 65 264 Tify Gene Family AT4G24470 62.6 5.7e-61 231.5
Bda06g01129 . 76 285 Tify Gene Family AT4G24470 51.5 2.5e-48 189.5
Bda06g01129 . 89 279 Tify Gene Family AT1G51600 62.4 1.3e-57 220.3
Bda13g01362 . 25 241 Tify Gene Family AT1G51600 53.0 2.3e-51 199.5
Bda03g00450 CCT 46 249 Tify Gene Family AT1G51600 54.7 7.4e-50 194.5
Bda11g00807 . 68 246 Tify Gene Family AT1G51600 60.8 1.5e-47 186.8
Bda11g00806 CCT 16 264 Tify Gene Family AT4G24470 53.3 1.8e-62 236.5
Bda03g00450 CCT 65 264 Tify Gene Family AT4G24470 62.6 5.7e-61 231.5
Bda06g01129 . 76 285 Tify Gene Family AT4G24470 51.5 2.5e-48 189.5
Bda06g01129 . 89 279 Tify Gene Family AT1G51600 62.4 1.3e-57 220.3
Bda13g01362 . 25 241 Tify Gene Family AT1G51600 53.0 2.3e-51 199.5
Bda03g00450 CCT 46 249 Tify Gene Family AT1G51600 54.7 7.4e-50 194.5
Bda11g00807 . 68 246 Tify Gene Family AT1G51600 60.8 1.5e-47 186.8
Bda11g00596 CCT 1 174 Tify Gene Family AT4G14713 51.6 1.2e-41 166.8
Bda08g00254 CCT 1 184 Tify Gene Family AT4G14720 53.1 9.5e-43 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16057 PF06203 CCT 1.70E-16 CL0281 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01129 Bda_Chr06 FPKM 3.56155 3.513845 3.416634 3.845837 7.607405 7.451647 6.89505 5.003081 5.495576