Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01129 ATGCCGGAATCTAATCGCCAAGTTTCATTGTTCGGGTCATCCAGACCTATGAATAATAACGAAGATAACAACTGTACGTTACAATCCCAAGATGAAGACGAAGACGACGATGTGACGGGAGGAGAAGAATCCATAGACGATCCTCAGTTACGCTTCGAGGGTGGTGGCGGTGTAGATGAATCTGTCACAGTGTTTTCTGGCGCTCAAAATACTGCTCCTTGTAGTACTGTTTACGGTCCTGCTTCGGATTATCACCCAGCTACCGGAAATGGCAGCTCTGACCAGCTGACGCTTTCCTTTCAAGGCGAAGTTTATGTGTTTGATGCTGTTTCGCCTGATAAGGTGCAAGCCGTGCTTTTACTTTTGGGTGGATATGAAATTCCCTCTGGTATTCCTGCTGTGGGATCTGCCCCTCTTAGTCAACGGGTTACAAGTGACTTTCCCGTAAGGTCAATTCAACCACAGAGAGCGGCTTCGTTAAGTCGATTTCGAGAGAAAAGAAAAGAGAGGTGTTTCGATAAGAAAATACGTTATAATGTGCGTAAAGAAGTAGCACTCAGGATGCAGCGTAACAAAGGCCAGTTTGCATCATCTAAAGCTAGTTCTGATGAAGCCGGCTCGGCTTCTTCAATGTGGAGTCCGGGACAGGGTGTTGGACAAGATGAGAACATGCAGGAAACTTTATGCACCCACTGTGGAATCAGTTCAAAGTTTACTCCAATGATGCGACGGGGCCCATCTGGCCCTAGAACTTTATGCAATGCTTGCGGGCTCAAGTGGGCAAATAAGGGAGTGCTAAGAGATCTTTCTAAAGTTCCGAAGACCAATAGCCAGGATCCTTCTCTTAAAGATCCAGAGCAGGTTGCTTAA 870 46.44 MPESNRQVSLFGSSRPMNNNEDNNCTLQSQDEDEDDDVTGGEESIDDPQLRFEGGGGVDESVTVFSGAQNTAPCSTVYGPASDYHPATGNGSSDQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGSAPLSQRVTSDFPVRSIQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRNKGQFASSKASSDEAGSASSMWSPGQGVGQDENMQETLCTHCGISSKFTPMMRRGPSGPRTLCNACGLKWANKGVLRDLSKVPKTNSQDPSLKDPEQVA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40159870 40165020 + Bda022925.1 Bda06g01129 8711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01129 289 ProSiteProfiles Tify domain profile. 89 124 IPR010399 -
Bda06g01129 289 MobiDBLite consensus disorder prediction 1 52 - -
Bda06g01129 289 PANTHER GATA TRANSCRIPTION FACTOR 18 17 287 - -
Bda06g01129 289 SMART tify_2 89 124 IPR010399 -
Bda06g01129 289 MobiDBLite consensus disorder prediction 27 43 - -
Bda06g01129 289 Pfam CCT motif 156 198 IPR010402 GO:0005515
Bda06g01129 289 MobiDBLite consensus disorder prediction 269 289 - -
Bda06g01129 289 ProSitePatterns GATA-type zinc finger domain. 229 256 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 Gene3D - 219 280 IPR013088 GO:0006355|GO:0008270
Bda06g01129 289 CDD ZnF_GATA 229 274 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 Pfam tify domain 92 123 IPR010399 -
Bda06g01129 289 SMART GATA_3 223 281 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 MobiDBLite consensus disorder prediction 1 26 - -
Bda06g01129 289 ProSiteProfiles GATA-type zinc finger domain profile. 223 279 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 PANTHER GATA TRANSCRIPTION FACTOR 28 17 287 IPR045280 GO:0006355
Bda06g01129 289 MobiDBLite consensus disorder prediction 271 289 - -
Bda06g01129 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 276 - -
Bda06g01129 289 Pfam GATA zinc finger 229 265 IPR000679 GO:0006355|GO:0043565
Bda06g01129 289 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Bda06g01129 289 MobiDBLite consensus disorder prediction 192 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01129 Bda-Chr6:40159870 Bda11g00806 Bda-Chr11:7985592 1.68E-86 dispersed
Bda06g01129 Bda-Chr6:40159870 Bda03g00450 Bda-Chr3:3847408 4.45E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16057 PF06203 CCT 1.70E-16 CL0281 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01129 - - jre:108983906 400.979