Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01133 ATGGGTTTGGCTTTTCCCTTTTATTTGCTCCTAATCTTGATTTATACTTCTCCCGCCGCTGTTCTCTTCTCTCCGGCCGCGGTTTCCGTTTCCGCTTTGTCCTTTAATCTAACCAGCTTCGATTCCAGAGACGGCAACATCACTTACGAGAGAGCTTACGCTGCAAGAGGAGCAATCCAGCTAACGGGGGAGATAGCCAACACAGCAACCATCGGCCAGGCTACGTATGTCCAGCCTCTTCACCTCTGGGATAAAGCCTCCGGAAATCTCACAGATTTCTCGACTCATTTCGCCTTCGCCATCGATTCACAGAATGGACCGTTATACGGCGACGGGCTAGCTTTTTTCTTTGCTCCCGAAAACACAAAGATCGATCCAAATATCACGAAGGGTGGAGGTTTGGGTCTAATCAACACCGACCAATCCCTTAACTCGACTGACCGGCCATTTTTTGCGGTGGAGTTTGATGTCTTTAGTAACGATTGGGATCCGCCTTATCACCATGTAGGTATTGACATCAATTCGATAGAATCTTTGGCTATTTCAAGCTGGCAGAGTACTGTTACTGTTATGGAAGGAAGAACAAGCGAAGCATGGATTGTTTATCGTTCTGATTCTCATAATTTGAGTGTTACTTTTACCGGTCTTTCAGGCAATTCTACTGTTTTGACGAGTTTTTCTCATGTAATTGATCTAAGAAAGTATTTGCCTGAGTATGTTACTATGGGATTTTCTGCTGCCACTGGAAATAATTCTGCACTTCATCGAATATATTCTTGGGATTTCTCTTCTTCCACCATTGTATTCCCCAATTTGACAGCTAATGTGACCCCCAACGGAACCACCACAGGAACTCCAGGTGGTGGAACTGCTGGCAAGAAGGGGCTTGTTGCAGGTTTGAGTGTTGGTGGTGGGTTGGTTTTAGTGGCTTGTCTTGGTTTGGTCTGGTTATGGATTCGGAAGAGAAAAAGAAGGGGCGAAGAAGAAGATGAGGGGTTTGATGAGTATATGGATCCAGAAATTGAAATGGGTAATGGACCGAAGAGGTTTTCCTATGCAGAATTGGCTAGAGCGACCCATAATTTCAGTGTCTCTGAAAAGCTCGGACAAGGAGGATTTGGTGAAGTTTATAAAGGCTTTTTAGCAGACTTAAACACATATGTCGCCGTGAAGAGAGTGTCAAAGGGCTCTAGACAGGGCATTAAGGAGTATGCATCAGAAATACGGGTCATTAGCCGGTTGAGGCATCGGAATTTAGTGCAGCTAATCGGATGGTGCCACGAAAAGAAAGAACTTCTGCTGGTCTATGAATTGATGTCAAATGCAAGCTTGGATGCCCATCTTTTCAAAGAAAACTCCTTATTGACATGGGGAATTAGATACAAAATAGCTCAAGGAATCGCCTCGGCTTTACTTTATCTCCACGAGGAGTGGGAGCAATGTGTAGTTCATCGAGACATAAAATCAAGCAATGTCATGTTGGATTCGAGCTTCAACGCGAAACTTGGAGATTTCGGGTTGGCTCGGCTGGTCGACCATGAAAAAGGGTCTCAAACTACAGTCCTAGCCGGCACATTCGGCCACATGGCCCCCGAATGTGCGACAACCGGTAGAGCAAGTAAAGAGTCTGATGTTTTCAGTTTTGGAATCGTAGCTTTAGAAATCGCTTGTGGGAGAAAACCCATCAATCCAAAAGCCAAACTCGATGAAATAGTGATGGTCGAGTGGGTGTGGAAGCTCTACGGCGATGGAAACATTCTAGAAGCTTCTGACCCGAAACTCTCCCGAGACTTCGATTCGAGGCAGATGGAATGCTTGATGGTTGTTGGACTGTGGTGTGCTCATCCAGACATCAATTACAGGCCTGCAATCAGACAGGCAATTCAGGTTCTTAATTTTGAGGCTCCACTTCCTTCCCTTCCACCCAAAATACCTGTGCCTAGTTATCTCTCTTCTCCTCCAAAACAAGTGTCCTCTTTTTCACTCACTGCAAATGACACTGAAGTTGAAAATGGCAAAGCCCAGTATCCCAATTATAGCTATTCTACCAATTCTTCAGAGGCTACTACCTCAAGCTCAGCTGCTGACCATTCTTAA 2097 45.21 MGLAFPFYLLLILIYTSPAAVLFSPAAVSVSALSFNLTSFDSRDGNITYERAYAARGAIQLTGEIANTATIGQATYVQPLHLWDKASGNLTDFSTHFAFAIDSQNGPLYGDGLAFFFAPENTKIDPNITKGGGLGLINTDQSLNSTDRPFFAVEFDVFSNDWDPPYHHVGIDINSIESLAISSWQSTVTVMEGRTSEAWIVYRSDSHNLSVTFTGLSGNSTVLTSFSHVIDLRKYLPEYVTMGFSAATGNNSALHRIYSWDFSSSTIVFPNLTANVTPNGTTTGTPGGGTAGKKGLVAGLSVGGGLVLVACLGLVWLWIRKRKRRGEEEDEGFDEYMDPEIEMGNGPKRFSYAELARATHNFSVSEKLGQGGFGEVYKGFLADLNTYVAVKRVSKGSRQGIKEYASEIRVISRLRHRNLVQLIGWCHEKKELLLVYELMSNASLDAHLFKENSLLTWGIRYKIAQGIASALLYLHEEWEQCVVHRDIKSSNVMLDSSFNAKLGDFGLARLVDHEKGSQTTVLAGTFGHMAPECATTGRASKESDVFSFGIVALEIACGRKPINPKAKLDEIVMVEWVWKLYGDGNILEASDPKLSRDFDSRQMECLMVVGLWCAHPDINYRPAIRQAIQVLNFEAPLPSLPPKIPVPSYLSSPPKQVSSFSLTANDTEVENGKAQYPNYSYSTNSSEATTSSSAADHS 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40212318 40214414 - Bda022929.1 Bda06g01133 8715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01133 698 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Bda06g01133 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Bda06g01133 698 Pfam Legume lectin domain 33 266 IPR001220 GO:0030246
Bda06g01133 698 Gene3D Phosphorylase Kinase; domain 1 347 438 - -
Bda06g01133 698 PANTHER RECEPTOR LECTIN KINASE 28 686 - -
Bda06g01133 698 SUPERFAMILY Protein kinase-like (PK-like) 346 655 IPR011009 -
Bda06g01133 698 Pfam Protein kinase domain 363 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g01133 698 ProSiteProfiles Protein kinase domain profile. 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g01133 698 SMART serkin_6 362 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g01133 698 Gene3D Transferase(Phosphotransferase) domain 1 439 651 - -
Bda06g01133 698 CDD STKc_IRAK 368 632 - -
Bda06g01133 698 MobiDBLite consensus disorder prediction 652 698 - -
Bda06g01133 698 Gene3D - 31 269 - -
Bda06g01133 698 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 267 IPR013320 -
Bda06g01133 698 PANTHER - 28 686 - -
Bda06g01133 698 CDD lectin_legume_LecRK_Arcelin_ConA 33 265 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01133 - - - csin:114261330 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01119 Bda-Chr6:39851201 Bda06g01133 Bda-Chr6:40212318 0 dispersed
Bda06g01133 Bda-Chr6:40212318 Bda15g00976 Bda-Chr15:18145179 4.80E-104 dispersed
Bda06g01133 Bda-Chr6:40212318 Bda12g00968 Bda-Chr12:40858567 4.64E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69685 PF00069 Pkinase 1.30E-48 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01133 Bda_Chr06 FPKM 28.680246 32.786488 21.620857 22.117268 28.137142 26.313627 28.312813 21.462643 22.194313