Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01146 ATGGCTAAATTTTCTATAGTCATTGTTTTTGTTTTCATAGCTCAACTCTCTCATGCACAAAACTCACCTCAAGACTACGTCAATGCTCACAACTCAGCTCGCACACAGGTGGGAGTTGGACCCATCGCTTGGGACAACAACTTAGCAAACTGGGCTCAAAGCTACATCAACACGCTCAAGGCAAGTTGTCGGATGGTCCACTCTGGCGGGCCCTACGGCGAGAACCTTGCATGGAGCTCTGGTGACATGTCTGGCACCAGTGCGGTCAGCCTCTGGGTGGCTGAGAAACCCTTTTACGACTACAACTCCAACTCTTGCATTGGCGGAGAGTGCCTACACTACACTCAAGTGGTGTGGCGAAACTCTGTGAGGCTCGGTTGTGCTAAGGTAAGGTGCAATAATGGAGGCACTATCATCTCTTGTAACTACGATCCCCCTGGTAATTATATCGGCCGTAGACCATACTAG 468 49.79 MAKFSIVIVFVFIAQLSHAQNSPQDYVNAHNSARTQVGVGPIAWDNNLANWAQSYINTLKASCRMVHSGGPYGENLAWSSGDMSGTSAVSLWVAEKPFYDYNSNSCIGGECLHYTQVVWRNSVRLGCAKVRCNNGGTIISCNYDPPGNYIGRRPY 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40518334 40518801 + Bda022947.1 Bda06g01146 8728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01146 155 ProSitePatterns CRISP family signature 2. 138 149 IPR018244 GO:0005576
Bda06g01146 155 Gene3D CAP 20 155 IPR035940 -
Bda06g01146 155 PRINTS Allergen V5/Tpx-1 family signature 138 151 IPR001283 -
Bda06g01146 155 PRINTS Allergen V5/Tpx-1 family signature 111 127 IPR001283 -
Bda06g01146 155 PRINTS Allergen V5/Tpx-1 family signature 42 60 IPR001283 -
Bda06g01146 155 PRINTS Allergen V5/Tpx-1 family signature 88 101 IPR001283 -
Bda06g01146 155 CDD CAP_PR-1 23 155 - -
Bda06g01146 155 PANTHER PATHOGENESIS-RELATED PROTEIN 1 5 155 - -
Bda06g01146 155 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 5 155 IPR001283 -
Bda06g01146 155 SUPERFAMILY PR-1-like 14 155 IPR035940 -
Bda06g01146 155 SMART SCP_3 21 151 IPR014044 -
Bda06g01146 155 Pfam Cysteine-rich secretory protein family 27 143 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01146 K13449 PR1; pathogenesis-related protein 1 - qsu:112036655 251.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01146 Bda-Chr6:40518334 Bda06g01150 Bda-Chr6:40583785 1.59E-92 dispersed
Bda14g01216 Bda-Chr14:12232672 Bda06g01146 Bda-Chr6:40518334 8.27E-32 dispersed
Bda06g01145 Bda-Chr6:40448609 Bda06g01146 Bda-Chr6:40518334 2.39E-112 tandem
Bda06g01146 Bda-Chr6:40518334 Bda06g01147 Bda-Chr6:40527291 4.97E-62 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01146 Bda_Chr06 FPKM 15.279076 15.901697 19.428278 18.482159 9.848925 11.052631 10.089614 25.879772 26.328197