Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01147 ATGTGGGTGGCAAAGCTTCTCCTGGCCATAGGCATTCTTTCTCTAGCTACAATCCAAGCCACCCGTCCACAAAACTACCGTCAAGACTTTGTCGACGCCCACAATGTGGCTCGAGCCCAGGTTGGAGTTGGTCCAATCTTCTGGAATGAGACGGTAGCCGCCTACGCTCGACGATACGCTCAGTCCAGATTCTCTGACTGCAACTTGGAGCATTCTGGGGGACCTTATGGAGAGAACATCGCCGAGGGGTACGACAAGTTGTCCGGAGGAGACGCTGTGAGGTTATGGGTGGCGGAAAAGGCAAATTACCACTACTCTTCGAACGCGTGCGTGGGCGGCGAGTGCCTCCACTATACGCAAGTTGTGTGGCGGAATTCAGTACATCTCGGATGTGCCAGTGTCAAGTGTTACAACGGGTGGGTTTTTGTCACTTGTAACTATGATCCACCTGGCAATTACATCGGTGATCGTCCTTACTAA 480 52.5 MWVAKLLLAIGILSLATIQATRPQNYRQDFVDAHNVARAQVGVGPIFWNETVAAYARRYAQSRFSDCNLEHSGGPYGENIAEGYDKLSGGDAVRLWVAEKANYHYSSNACVGGECLHYTQVVWRNSVHLGCASVKCYNGWVFVTCNYDPPGNYIGDRPY 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40527291 40527770 + Bda022948.1 Bda06g01147 8729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01147 159 Gene3D CAP 24 159 IPR035940 -
Bda06g01147 159 SUPERFAMILY PR-1-like 24 159 IPR035940 -
Bda06g01147 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 19 159 IPR001283 -
Bda06g01147 159 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Bda06g01147 159 PANTHER PATHOGENESIS-RELATED PROTEIN 1 19 159 - -
Bda06g01147 159 SMART SCP_3 25 155 IPR014044 -
Bda06g01147 159 CDD CAP_PR-1 28 159 - -
Bda06g01147 159 Pfam Cysteine-rich secretory protein family 31 147 IPR014044 -
Bda06g01147 159 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Bda06g01147 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Bda06g01147 159 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Bda06g01147 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01147 K13449 PR1; pathogenesis-related protein 1 - qsu:112017595 246.128
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01147 Bda-Chr6:40527291 Bda06g01166 Bda-Chr6:41041586 2.83E-106 dispersed
Bda06g01146 Bda-Chr6:40518334 Bda06g01147 Bda-Chr6:40527291 4.97E-62 tandem
Bda06g01147 Bda-Chr6:40527291 Bda06g01148 Bda-Chr6:40557791 3.34E-99 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01147 Bda_Chr06 FPKM 257.4263 283.934967 6.230481 7.103457 10.160366 8.079041 8.653997 2.699305 2.516094