Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01150 ATGATAGTATTACAAAGTTTCTTCCTATATATAACACCACCAAAGAGTAGTTCTTTTCCATCAAAAGAAAGAAGAAAACCAATTTACAAGATGGCTAAATTTTCTTTAGTCTTTGCTTTTGTTTTCTTAGCTCATCTTTCTCTTGCCCAAAACTCTCCTGAAGACTACATTATTGCTCACAACACAGCTCGCTCAGATGTCGGAGTTGGAGCAATCACTTGGGACAACAACTTAGCAACCTGGGCGCAAAACTACATCAACACGCTCAGTTCCAGTTGCCAAATGGTCCACTCTGGTGGGCCCTACGGCGAGAACCTTGCGATGAGCTCCGGCGACATGTCTGGCACCACTGCAGTTGACCTCTGGGTGGCAGAGAAACCTTTTTACGACTACAACTCCAACTCTTGCATTAGCGGAGAGTGCCTACACTACACTCAAGTGGTGTGGCAAAACTCTGTACGACTTGGCTGTGCTAAGGTCAGCTGCAACAGTGGAGGCACTATCATCTCTTGCAACTATGATCCACGGGGTAATGTTAATGACCAGAGACCATACTAA 558 44.98 MIVLQSFFLYITPPKSSSFPSKERRKPIYKMAKFSLVFAFVFLAHLSLAQNSPEDYIIAHNTARSDVGVGAITWDNNLATWAQNYINTLSSSCQMVHSGGPYGENLAMSSGDMSGTTAVDLWVAEKPFYDYNSNSCISGECLHYTQVVWQNSVRLGCAKVSCNSGGTIISCNYDPRGNVNDQRPY 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40583785 40584342 + Bda022952.1 Bda06g01150 8732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01150 185 SUPERFAMILY PR-1-like 44 185 IPR035940 -
Bda06g01150 185 Gene3D CAP 48 185 IPR035940 -
Bda06g01150 185 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 36 185 IPR001283 -
Bda06g01150 185 PRINTS Allergen V5/Tpx-1 family signature 141 157 IPR001283 -
Bda06g01150 185 PRINTS Allergen V5/Tpx-1 family signature 72 90 IPR001283 -
Bda06g01150 185 PRINTS Allergen V5/Tpx-1 family signature 118 131 IPR001283 -
Bda06g01150 185 PRINTS Allergen V5/Tpx-1 family signature 168 181 IPR001283 -
Bda06g01150 185 CDD CAP_PR-1 53 185 - -
Bda06g01150 185 SMART SCP_3 51 181 IPR014044 -
Bda06g01150 185 Pfam Cysteine-rich secretory protein family 59 173 IPR014044 -
Bda06g01150 185 ProSitePatterns CRISP family signature 2. 168 179 IPR018244 GO:0005576
Bda06g01150 185 PANTHER PATHOGENESIS-RELATED PROTEIN 1 36 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01150 K13449 PR1; pathogenesis-related protein 1 - qsu:112036655 233.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01145 Bda-Chr6:40448609 Bda06g01150 Bda-Chr6:40583785 7.79E-94 dispersed
Bda06g01146 Bda-Chr6:40518334 Bda06g01150 Bda-Chr6:40583785 1.59E-92 dispersed
Bda06g01150 Bda-Chr6:40583785 Bda09g01093 Bda-Chr9:41473016 1.87E-55 dispersed
Bda06g01149 Bda-Chr6:40577781 Bda06g01150 Bda-Chr6:40583785 4.53E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01150 Bda_Chr06 FPKM 1.684012 1.329224 1.888799 2.068776 2.501385 2.768947 2.598542 2.558114 2.290197