Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01152 ATGTCTCTCGCTCTGTTAGCGCCCTTCCCTCGTGTGGCGTTTCGCCTCCACCATTTTTTCAAAACCCACCTTCCGAAATCTTATTCCATTACTCAAACGACTCATTTCTCTGTCTCTGCTTCCGTTAGGCATCAACCCACTTACCCAATTCCTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGAAACTCTAATTCCTAGCCCGAAGCTTGCTGGCCATCTTCAGGACTCTCTTCAGTGGGTTTGTCGTACTGGGTTATGCGGAGAATTGTCTATTGACGATGTTGGTAAACGAGTTCGACTCTGTGGATGGGTGGCTCTTCATAGGGTCCATGGTGGTCTCACCTTTCTCAATCTTAGGGACCATACTGGTATTGTTCAGGTGACTACGCTTCCTGATGAGTTTCCAGACGCCCATTCCACCATTAATGACTTGAGGCTTGAGTATGTGGTTGCTGTGGAAGGGATTGTCCGGTCTCGGCCTAGTGAATCGATTAATAAAAAGATGAAAACTGGCTTGATAGAGGTTGCTGCAGAGAATGTTCAAGTTTTGAATGCTGTAAGATTAAAGTTGCCATTCTTAGTTACGACGGGGGATGATGGAAAAGATTCTGCTAAAGAAGAAATACGTTTGAGATACCGATACCTTGATCTGCGGAGGCAGCAAATGAATGTTAACTTAATGTTGCGGCATAAAGTGGTGAAGCTTATTCGAAGATTTTTGGAGGATATTCATGATTTTGTAGAGATTGAGACTCCAATACTTTCTAGATCTACTCCGGAAGGTGCCCGAGATTATTTGGTACCGTCTAGAGTCCAGCCAGGAACTTTCTATGCGTTACCACAAAGTCCGCAACTGTTTAAGCAAATGCTTATGGTTTCTGGTTTTGACAAATACTATCAAATAGCAAGATGTTTCCGAGATGAGGACTTAAGAGCAGATCGACAACCTGAATTTACACAGCTTGATATTGAATTAGCATTCCCCACATTGGAGAACATGCTGAGTCTTAATGAAGAATTGATTAGAAAGGTTTTTTGGGAAATCAAAGGAGTTCGGCTGCCAAATCCTTTCCCAAGGCTTACGTATGCCGAAGCCATGAGTCGATATGGTTCAGATAGACCAGATACAAGATTTGACCTCGAGTTGCGAGATGTGTCTGATTTCTTCGTCGACTCCAGCTTCCGGGTTTTTGCAGATGCTCTAAAAGGCGGAGGAATTATCAAAGCGCTTTGTGTGCCATCGGGTGCTAAAATTTATTCAAACTCGGCTCTTAAAAAAGGGGATATTTACAACGAAGCGATGAAATCAGGAGCAAAAGGGTTGCCCTTCCTCAAAGTCTTAGATGATGGTGAGGTCGAAGGTATTCCAGCACTCGTAGCAACCTTGGGTCCTTCGAAACATTCGATTCTGTGGGTGACCGATTTCCCGATGTTTGAGTGGAATGAGTCAGAGCAGAGGCTTGAGGCCTTGCATCATCCTTTCACTGCTCCAAACCCAGAAGACATGAATGATCTTTCTTCTGCCCGAGCCCTCGCATACGACATTGTCTACAATGGAGTGGAGATCGGTGGGGGAAGCTTGAGAATTTACAAACGCGATATTCAACAGAAAGTTTTGGAGATTGTGGGCATCTCTCCCGAACAGGCCGAAGCCAAGTTCGGATACCTTTTGGAGGCATTAGACATGGGTGCTCCTCCTCACGGAGGGATTGCTTATGGATTGGATAGATTAGTCATGTTATTGGCCGGAGCCAATTCAATAAGAGACGTCATAGCTTTTCCGAAAACAACCACCGCGCAGTGTGCTCTTACCAGAGCTCCGTCGGAGGTGGATTCTCTGCAGCTCAAGGAATTAGCGAATTTCGATAAATAG 1887 44.83 MSLALLAPFPRVAFRLHHFFKTHLPKSYSITQTTHFSVSASVRHQPTYPIPPSSSSSSSSSSSSVETLIPSPKLAGHLQDSLQWVCRTGLCGELSIDDVGKRVRLCGWVALHRVHGGLTFLNLRDHTGIVQVTTLPDEFPDAHSTINDLRLEYVVAVEGIVRSRPSESINKKMKTGLIEVAAENVQVLNAVRLKLPFLVTTGDDGKDSAKEEIRLRYRYLDLRRQQMNVNLMLRHKVVKLIRRFLEDIHDFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDIELAFPTLENMLSLNEELIRKVFWEIKGVRLPNPFPRLTYAEAMSRYGSDRPDTRFDLELRDVSDFFVDSSFRVFADALKGGGIIKALCVPSGAKIYSNSALKKGDIYNEAMKSGAKGLPFLKVLDDGEVEGIPALVATLGPSKHSILWVTDFPMFEWNESEQRLEALHHPFTAPNPEDMNDLSSARALAYDIVYNGVEIGGGSLRIYKRDIQQKVLEIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRAPSEVDSLQLKELANFDK 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40604394 40609305 - Bda022954.3 Bda06g01152 8734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01152 628 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 86 628 IPR004524 GO:0005524|GO:0016874
Bda06g01152 628 Pfam tRNA synthetases class II (D, K and N) 211 602 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda06g01152 628 CDD AspRS_core 231 602 - -
Bda06g01152 628 Pfam GAD domain 402 463 IPR029351 -
Bda06g01152 628 Gene3D Bira Bifunctional Protein; Domain 2 202 385 IPR045864 -
Bda06g01152 628 Gene3D Bira Bifunctional Protein; Domain 2 455 625 IPR045864 -
Bda06g01152 628 Pfam OB-fold nucleic acid binding domain 103 187 IPR004365 GO:0003676
Bda06g01152 628 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 63 468 - -
Bda06g01152 628 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 469 624 - -
Bda06g01152 628 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 63 468 IPR004524 GO:0005524|GO:0016874
Bda06g01152 628 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 469 624 IPR004524 GO:0005524|GO:0016874
Bda06g01152 628 SUPERFAMILY GAD domain-like 383 456 IPR004115 GO:0004812|GO:0005524|GO:0005737
Bda06g01152 628 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 231 599 IPR006195 -
Bda06g01152 628 SUPERFAMILY Nucleic acid-binding proteins 87 189 IPR012340 -
Bda06g01152 628 CDD EcAspRS_like_N 87 227 - -
Bda06g01152 628 SUPERFAMILY Class II aaRS and biotin synthetases 206 624 IPR045864 -
Bda06g01152 628 TIGRFAM aspS_bact: aspartate--tRNA ligase 87 459 IPR004524 GO:0005524|GO:0016874
Bda06g01152 628 PRINTS Aspartyl-tRNA synthetase signature 518 534 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda06g01152 628 PRINTS Aspartyl-tRNA synthetase signature 284 296 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda06g01152 628 PRINTS Aspartyl-tRNA synthetase signature 562 576 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda06g01152 628 PRINTS Aspartyl-tRNA synthetase signature 301 314 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda06g01152 628 Gene3D - 79 191 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01152 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - vvi:100241273 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01279 Bda-Chr4:63264067 Bda06g01152 Bda-Chr6:40604394 5.17E-158 dispersed
Bda06g01152 Bda-Chr6:40604394 Bda01g01911 Bda-Chr1:55264693 2.96E-15 dispersed
Bda06g01152 Bda-Chr6:40604394 Bda11g00094 Bda-Chr11:1088773 5.27E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01152 Bda_Chr06 FPKM 0.232432 0.241526 0.0 0.185886 0.862336 0.77717 0.763986 0.613096 0.721177