Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01165 GCGCGGGGTTATCCTCCCCACCTATCGAAGCCCGGTCTCACAGCGACGGAGGACGACGCTGATCCGACCCGTTTAGCCTCCGTGGCGTTAGGGGCTTCCGTGGGCGGTGGACTCCGGAAGAAGGGAATTGGGGTTAGGTCATGGCTGCTTTTGGACTCTACCGGTGTTGCGCAGGTCGTTGAGGTGGGCAAGCACGCAATCATGCGCCGGACGGGTTTGCCTGCTCGCGATCTTCGGATTTTGGATCCTTTATTGTCGTATCCTTCAACCATTTTGGGCCGTGAGAGAGCGATTGTGATTAATCTGGAGCATATTAAAGCCATTATCACGGCTCATGAGGTGCTTCTGTTGAACTCTAGAGACCCCTCGGTGACGCCCTTTGTTGAAGAGCTACAGAGACGGATACTGCGTCATCACCAAGCCACCAAGGCACAAGAGGGCAAGGGCGCTGATTCAAATTGGACTGATATCTATGATTTGGGAGAGGCAAGATCAAGGGCTGTAAGTCCAGAAAATCCATATCAAGGATTTCCACAGTCTCAAGAAGGAAAAGAGGAAGGAAAGGAAGGTGGGAAACAAGGTCTTGATAACCACGATGGATTAAAGGTTCTCCCATTTGAGTTTGTTGCATTGGAAGCATGCCTTGAATCGACTTGCAGTAACTTAGAGAGTGAAGCTAAGACATTGGAGCAAGAGGCTCACCCAGCTTTGGATAAGCTGACTTCCAAGATCAGTACTCTCAATTTGGAACGTGTTCGTCAAATCAAAAGCCGATTGGTTGCAATAACTGGTCGAGTGCAAAAGATGAGGGATGAATTAGAACATTTGCTTGATGACGATGATGATATGGCAGAGATGTATTTGACAGAGAAGTTGGCTCAACAACAACTAGAAAACTCTTCCACATCCTCAATGGATGATGGAAATAACATGGACGATGAAGCTCTTCCCTCAGATATCGACTTCAGGCACTGTATCAGGTTACCTGCCGAAATAGATGGCGGTGGCATCCCGAGTAATTATGAAAGTGACATCCAGAACAATGAAGAACCTCAACACCCGCTTTTTGGTGGACCTAATGCACTTAGCCATGGAACCCATACGAGCACTACTCATAGTGCTTTAAGCAAACACCTTGATGTGGAGGAGCTTGAAATGCTTTTAGAGGCATACTTTGTTCAAATCGATGGTACTTCAAACAGACTATCTACGCTTCGAGAGTACGTGGACGACACAGAAGATTACATAAACATAATGTTGGATGACAAACAGAACCATCTTCTCCAAATGGGAGTTATGTTAACGACAGCAACTCTCGTTATCAGCGCCTTTGTTGTGTTGGCTGGAGTACTTGGCATGAACATACACATCGAGCTCTTTGACCTGGAAATAGGAAGTATGCATGAATTTCTTTGGACGGTCGGTGCAAGTGTCGCAGGAAGCGTTGTCCTCTATGTGATTGCCATTGCTTGGTACAAACACAAACGCTTGCTTGAG 1497 47.09 ARGYPPHLSKPGLTATEDDADPTRLASVALGASVGGGLRKKGIGVRSWLLLDSTGVAQVVEVGKHAIMRRTGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITAHEVLLLNSRDPSVTPFVEELQRRILRHHQATKAQEGKGADSNWTDIYDLGEARSRAVSPENPYQGFPQSQEGKEEGKEGGKQGLDNHDGLKVLPFEFVALEACLESTCSNLESEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKMRDELEHLLDDDDDMAEMYLTEKLAQQQLENSSTSSMDDGNNMDDEALPSDIDFRHCIRLPAEIDGGGIPSNYESDIQNNEEPQHPLFGGPNALSHGTHTSTTHSALSKHLDVEELEMLLEAYFVQIDGTSNRLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVLAGVLGMNIHIELFDLEIGSMHEFLWTVGASVAGSVVLYVIAIAWYKHKRLLE 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40987584 40992296 + Bda033726 Bda06g01165 8747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01165 499 CDD Mrs2_Mfm1p-like 48 497 IPR039204 -
Bda06g01165 499 Gene3D - 39 119 - -
Bda06g01165 499 Gene3D Magnesium transport protein CorA, transmembrane region 179 427 - -
Bda06g01165 499 Coils Coil 212 232 - -
Bda06g01165 499 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 31 499 - -
Bda06g01165 499 MobiDBLite consensus disorder prediction 182 196 - -
Bda06g01165 499 MobiDBLite consensus disorder prediction 336 374 - -
Bda06g01165 499 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 31 499 IPR039204 -
Bda06g01165 499 MobiDBLite consensus disorder prediction 165 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01165 - - - mnt:21394404 687.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01165 Bda-Chr6:40987584 Bda06g01174 Bda-Chr6:41159073 0 dispersed
Bda06g01157 Bda-Chr6:40677048 Bda06g01165 Bda-Chr6:40987584 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00562 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.8e-198 688.7
Bda05g00496 . 1 442 MRS2 Gene Family AT1G16010 76.7 4.1e-182 634.4
Bda11g01176 . 36 420 MRS2 Gene Family AT1G16010 57.0 1.9e-115 412.9
Bda08g00266 . 6 415 MRS2 Gene Family AT5G64560 71.0 3.5e-150 528.1
Bda06g01175 . 15 502 MRS2 Gene Family AT3G19640 61.8 6.1e-147 517.7
Bda06g01174 . 15 502 MRS2 Gene Family AT3G19640 62.1 7.5e-145 510.8
Bda06g01157 . 39 501 MRS2 Gene Family AT3G19640 64.5 7.5e-145 510.8
Bda06g01165 . 39 499 MRS2 Gene Family AT3G19640 64.6 1.1e-143 506.9
Bda11g01176 . 11 420 MRS2 Gene Family AT2G03620 64.3 7.5e-133 470.7
Bda12g00562 . 9 443 MRS2 Gene Family AT2G03620 52.5 8.0e-111 397.5
Bda05g00496 . 6 442 MRS2 Gene Family AT2G03620 50.3 1.7e-105 379.8
Bda08g00266 . 6 357 MRS2 Gene Family AT5G09690 68.0 1.2e-119 426.4
Bda12g00562 . 50 379 MRS2 Gene Family AT5G09690 51.7 3.2e-75 278.9
Bda08g00266 . 26 293 MRS2 Gene Family AT5G09720 67.6 1.1e-90 330.1
Bda12g00562 . 1 443 MRS2 Gene Family AT1G80900 82.4 7.7e-197 683.3
Bda05g00496 . 1 442 MRS2 Gene Family AT1G80900 75.8 1.5e-179 625.9
Bda11g01176 . 36 420 MRS2 Gene Family AT1G80900 56.6 7.4e-115 411.0
Bda09g00228 . 41 441 MRS2 Gene Family AT5G22830 70.7 5.1e-151 531.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39