Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01174 ATGGCGCGGGGTTATCCTCCCCACCCATCGAAGCCCGGTCTCCCCGCGACGGAGGACGACGGTGATCCGACCCGTTTAGCCTCTGTGGCGTTAGGAGCTTCCGTGGGCGGTGGACTCCGGAAGAAGGGAATTGGGGTTAGGGCGTGGCTGCTTTTGGACTCTACCGGTGTTGCGCAGGTCGTGGAAGTGGGCAAGCACGCAATCATGCGCCGGACGGGTTTGCCTGCGCGCGATCTTCGGATTTTGGATCCTTTATTGTCGTATCCATCAACCATTTTGGGCCGTGAGAGAGCGATTGTGATTAATCTGGAGCATATTAAAGCCATTATCACGGCTCAAGAGGTGCTTCTGTTGAACTCTAGAGACCCCTCGGTGACGCCCTTTGTCGAAGAGCTACAGAGACGGATACTGCGTCACCACCAAGCCACCAAGGCACAAGAGGGCAAGGGCGCTGATTCAAATTGGACTGATATCTATGATTTGGGAGAGGCAAGATCAAGGGCTGTAAGTCCAGAAAATCCATATCAAGGATTTCCACAGTCTCAAGAAGGAAAAGAGGAAGGAAAGGAAGGTGGGAAACAAGGTCTTGATAACCACGATGGATTAAAGGTTCTCCCATTTGAGTTTGTTGCATTGGAAGCATGCCTTGAATCTACTTGCAGTAACTTAGAGAGTGAAGCTAAGACATTGGAGCAAGAGGCTCACCCAGCTTTGGATAAGCTGACTTCCAAGATCAGTACTCTCAATTTGGAACGTGTTCGTCAAATCAAAAGCCGATTGGTTGCAATAACTGGTCGAGTGCAAAAGATGAGGGATGAATTAGAACATTTGCTTGATGACGATGATGATATGGCAGAGATGTATTTGACAGAGAAGTTGGCTCAACAACAACTAGAGAACTCTTCCACATCCTCAATGGATGATGGAAATAACAAGGACGATGAAGCTCTTCCCTCAGATATCGATTTCAGGCACTGTATCAGGTTACCTGCCGAAATATCAGTAGATGGTGGTGGCATCCCGAGTAATTATGAAAGTGACATCCAGAACAATGAAGAACCTCAACACCCGCTTTTTGGTGGACCTAATGCACTTAGCCATGGAACCCATACGAGCACGACTCATAGTGCTTTAAGCAAACACCTTGATGTGGAGGAGCTTGAAATGCTTTTAGAGGCATATTTTGTTCAAATCGATGGTACTTCAAACAACCTATCTACGCTTCGAGAGTACGTGGACGACACAGAAGATTACATAAACATAATGTTGGACGACAAACAGAACCATCTTCTCCAAATGGGAGTTATGTTAACGACAGCAACTCTCGTGGTCAGTGCCTTTGTTGTGGTGGCTGGAATATTTGGCATGAACATACACATTGAGCTCTTTGACCCGGCAATAGCAGGTATGCGTGAATTTCTTTGGACGGTTGGTGGAAGTGCCGCAGGAAGCGTTGTCCTCTATGTGATTGCCATTGCTTGGTGCAAATACAAACGCTTGCTTGAGTGA 1509 47.51 MARGYPPHPSKPGLPATEDDGDPTRLASVALGASVGGGLRKKGIGVRAWLLLDSTGVAQVVEVGKHAIMRRTGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITAQEVLLLNSRDPSVTPFVEELQRRILRHHQATKAQEGKGADSNWTDIYDLGEARSRAVSPENPYQGFPQSQEGKEEGKEGGKQGLDNHDGLKVLPFEFVALEACLESTCSNLESEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKMRDELEHLLDDDDDMAEMYLTEKLAQQQLENSSTSSMDDGNNKDDEALPSDIDFRHCIRLPAEISVDGGGIPSNYESDIQNNEEPQHPLFGGPNALSHGTHTSTTHSALSKHLDVEELEMLLEAYFVQIDGTSNNLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDPAIAGMREFLWTVGGSAAGSVVLYVIAIAWCKYKRLLE 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41159073 41162687 + Bda022982.1 Bda06g01174 8756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01174 502 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 33 502 IPR039204 -
Bda06g01174 502 MobiDBLite consensus disorder prediction 338 358 - -
Bda06g01174 502 CDD Mrs2_Mfm1p-like 49 500 IPR039204 -
Bda06g01174 502 Pfam CorA-like Mg2+ transporter protein 385 492 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bda06g01174 502 Gene3D - 41 120 - -
Bda06g01174 502 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 33 502 - -
Bda06g01174 502 Gene3D Magnesium transport protein CorA, transmembrane region 193 430 - -
Bda06g01174 502 MobiDBLite consensus disorder prediction 166 197 - -
Bda06g01174 502 MobiDBLite consensus disorder prediction 296 318 - -
Bda06g01174 502 Coils Coil 213 233 - -
Bda06g01174 502 MobiDBLite consensus disorder prediction 183 197 - -
Bda06g01174 502 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01174 - - - mnt:21394404 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01157 Bda-Chr6:40677048 Bda06g01174 Bda-Chr6:41159073 0 dispersed
Bda06g01165 Bda-Chr6:40987584 Bda06g01174 Bda-Chr6:41159073 0 dispersed
Bda06g01174 Bda-Chr6:41159073 Bda12g00562 Bda-Chr12:9654647 1.18E-114 dispersed
Bda06g01174 Bda-Chr6:41159073 Bda06g01175 Bda-Chr6:41170785 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00562 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.8e-198 688.7
Bda05g00496 . 1 442 MRS2 Gene Family AT1G16010 76.7 4.1e-182 634.4
Bda11g01176 . 36 420 MRS2 Gene Family AT1G16010 57.0 1.9e-115 412.9
Bda08g00266 . 6 415 MRS2 Gene Family AT5G64560 71.0 3.5e-150 528.1
Bda06g01175 . 15 502 MRS2 Gene Family AT3G19640 61.8 6.1e-147 517.7
Bda06g01174 . 15 502 MRS2 Gene Family AT3G19640 62.1 7.5e-145 510.8
Bda06g01157 . 39 501 MRS2 Gene Family AT3G19640 64.5 7.5e-145 510.8
Bda06g01165 . 39 499 MRS2 Gene Family AT3G19640 64.6 1.1e-143 506.9
Bda11g01176 . 11 420 MRS2 Gene Family AT2G03620 64.3 7.5e-133 470.7
Bda12g00562 . 9 443 MRS2 Gene Family AT2G03620 52.5 8.0e-111 397.5
Bda05g00496 . 6 442 MRS2 Gene Family AT2G03620 50.3 1.7e-105 379.8
Bda08g00266 . 6 357 MRS2 Gene Family AT5G09690 68.0 1.2e-119 426.4
Bda12g00562 . 50 379 MRS2 Gene Family AT5G09690 51.7 3.2e-75 278.9
Bda08g00266 . 26 293 MRS2 Gene Family AT5G09720 67.6 1.1e-90 330.1
Bda12g00562 . 1 443 MRS2 Gene Family AT1G80900 82.4 7.7e-197 683.3
Bda05g00496 . 1 442 MRS2 Gene Family AT1G80900 75.8 1.5e-179 625.9
Bda11g01176 . 36 420 MRS2 Gene Family AT1G80900 56.6 7.4e-115 411.0
Bda09g00228 . 41 441 MRS2 Gene Family AT5G22830 70.7 5.1e-151 531.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01174 Bda_Chr06 FPKM 25.814489 30.9715 20.440504 21.446228 23.690207 22.115168 25.273621 14.041249 15.527372