Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01175 ATGGCGCGGGGTTATCCTCCCCACCTATCGAAGCCCGGTCTCCCCGCGACGGAGGACGACGCTGATCCGACCCGTTTAGCCTCCGTGGCGTTAGGGGCTTCCGTGGGCGGTGGACTCCGGAAGAAGGGAATTGGGGTTAGGGCGTGGCTGCTTTTGGACTCTACCGGTGTTGCGCAGGTCGTGGAGGTGGGCAAGCACGCAATCATGCGCCGGACGGGTTTGCCTGCGCGCGATCTTCGGATTTTGGATCCTTTATTGTCGTATCCTTCAACCATTTTGGGCCGTGAGAGAGCGATTGTGATTAATCTGGAGCATATTAAAGCCATTATCACGGCTCAAGAGGTGCTTCTGTTGAACTCTAGAGACCCCTCGGTGACGCCCTTTGTTGAAGAGCTACAGAGACGGATACTGCGTCACCACCAAGTCACGAAGGCACAAGAGGGCAAGGGCGCTGATTCAAATTTGACTGATATCTATGATTTGGGAGAGGCAAGATCAAGGGCCGTAAGTCCAGAAAATTCATATCAAGGATTTCCACAGTCTCAAGAAGGAAAAGAGGAAGGAAAGGAAGGTGGGAAACAATGTCTTGATAACCACGACGGATTAAAGGTTCTCCCATTTGAGTTTGTTGCATTGGAAGCATGCCTTGAATCTACTTGCAGTAACTTAGAGAGCGAAGCTAAGACATTGGAGCAAGAGGCTCATCCAGCTTTGGATAAGCTGACTTCCCAGATCAGTACTATCAATTTGGAACGTGTTCGTCAAATCAAAAGCCGATTGGTTGCAATAACTGGTCGAGTGCAAAAGATGAGGGATGAATTAGAACATTTGCTTGATGACGATGATGATATGGCAGAGATGTATTTGACAGAGAAGTTGGCTCAACAACAACTAGAAAACTCTTCCACATCCTCAATGGATGATGGAAATAACATGGACGATGAAGCTCTTCCCTCAGATATCGACTCCAGGCACTGTATCAGGTTACCTGCCGAAATATCAGTAGATGGCGGTGGCATCCCGAGTAATTATGAAAGTGACATCCAGAACAATGAAGAACCTCAACACCCGCTTTTTGGTGGACCTAATGCACTAAGCCATGGAACCCATATAAGCACTACTCATAGTGCTTTAAGCAAACACCTTGATGTGGAGGAGCTTGAAATGCTTTTAGAGGCCTACTTTGTTCAAATCGATGGTACATCAAATAAACTATCTACGCTTCGAGAGTACGTGGCCGACACAGAAGATTACATAAACATAATGTTGGACGACAAGCAGAACCATCTTCTCCAAATGGGAGTTTTGTTAACGACGGCAACTCTCGTGGTCAGCGCCTTTGTTGTGGTGTCTAGTATATTTGGCATGAACATACACATCGAGCTCTTTAACGTGGAAATAGGAAGTCCGCATGAATTTCTTTGGACGGTCGGTGCAAGTGTCGCAGGAAGCGTTGTCCTCTATGTGATTGCCATTGCTTGGTGCAAACACAAACGCTTGCTTGAGTGA 1509 47.45 MARGYPPHLSKPGLPATEDDADPTRLASVALGASVGGGLRKKGIGVRAWLLLDSTGVAQVVEVGKHAIMRRTGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITAQEVLLLNSRDPSVTPFVEELQRRILRHHQVTKAQEGKGADSNLTDIYDLGEARSRAVSPENSYQGFPQSQEGKEEGKEGGKQCLDNHDGLKVLPFEFVALEACLESTCSNLESEAKTLEQEAHPALDKLTSQISTINLERVRQIKSRLVAITGRVQKMRDELEHLLDDDDDMAEMYLTEKLAQQQLENSSTSSMDDGNNMDDEALPSDIDSRHCIRLPAEISVDGGGIPSNYESDIQNNEEPQHPLFGGPNALSHGTHISTTHSALSKHLDVEELEMLLEAYFVQIDGTSNKLSTLREYVADTEDYINIMLDDKQNHLLQMGVLLTTATLVVSAFVVVSSIFGMNIHIELFNVEIGSPHEFLWTVGASVAGSVVLYVIAIAWCKHKRLLE 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41170785 41175600 + Bda022983.1 Bda06g01175 8757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01175 502 CDD Mrs2_Mfm1p-like 49 500 IPR039204 -
Bda06g01175 502 Gene3D - 41 120 - -
Bda06g01175 502 Gene3D Magnesium transport protein CorA, transmembrane region 187 430 - -
Bda06g01175 502 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 33 502 - -
Bda06g01175 502 MobiDBLite consensus disorder prediction 1 21 - -
Bda06g01175 502 Coils Coil 213 233 - -
Bda06g01175 502 MobiDBLite consensus disorder prediction 167 194 - -
Bda06g01175 502 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 33 502 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01175 - - - mnt:21394404 667.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01175 Bda-Chr6:41170785 Bda12g00562 Bda-Chr12:9654647 8.10E-109 dispersed
Bda06g01174 Bda-Chr6:41159073 Bda06g01175 Bda-Chr6:41170785 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g735 . Blo03g00064 Bda06g01175 . Bpe07g00288 . . Bma12g00295 Cmo19g00556 Cmo11g01427 . . . . . Cpe04g00333 . . . . . . . . Cla02g00695 Cam02g0728 Cec02g0743 Cco02g0767 Clacu02g0739 Cmu02g0734 Cre02g1047 . Cone8ag1071 Cone3ag1040 . . Csa07g00673 . Cme01g00132 . . . . . . . . . . . Cma11g01693 Cma19g00542 Car11g01150 Car19g00399 . . . . . . . . . . . . . . . . . . Chy01g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00562 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.8e-198 688.7
Bda05g00496 . 1 442 MRS2 Gene Family AT1G16010 76.7 4.1e-182 634.4
Bda11g01176 . 36 420 MRS2 Gene Family AT1G16010 57.0 1.9e-115 412.9
Bda08g00266 . 6 415 MRS2 Gene Family AT5G64560 71.0 3.5e-150 528.1
Bda06g01175 . 15 502 MRS2 Gene Family AT3G19640 61.8 6.1e-147 517.7
Bda06g01174 . 15 502 MRS2 Gene Family AT3G19640 62.1 7.5e-145 510.8
Bda06g01157 . 39 501 MRS2 Gene Family AT3G19640 64.5 7.5e-145 510.8
Bda06g01165 . 39 499 MRS2 Gene Family AT3G19640 64.6 1.1e-143 506.9
Bda11g01176 . 11 420 MRS2 Gene Family AT2G03620 64.3 7.5e-133 470.7
Bda12g00562 . 9 443 MRS2 Gene Family AT2G03620 52.5 8.0e-111 397.5
Bda05g00496 . 6 442 MRS2 Gene Family AT2G03620 50.3 1.7e-105 379.8
Bda08g00266 . 6 357 MRS2 Gene Family AT5G09690 68.0 1.2e-119 426.4
Bda12g00562 . 50 379 MRS2 Gene Family AT5G09690 51.7 3.2e-75 278.9
Bda08g00266 . 26 293 MRS2 Gene Family AT5G09720 67.6 1.1e-90 330.1
Bda12g00562 . 1 443 MRS2 Gene Family AT1G80900 82.4 7.7e-197 683.3
Bda05g00496 . 1 442 MRS2 Gene Family AT1G80900 75.8 1.5e-179 625.9
Bda11g01176 . 36 420 MRS2 Gene Family AT1G80900 56.6 7.4e-115 411.0
Bda09g00228 . 41 441 MRS2 Gene Family AT5G22830 70.7 5.1e-151 531.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01175 Bda_Chr06 FPKM 3.483158 3.769862 4.214516 3.141147 41.623062 34.353455 41.712509 5.832691 5.75808