Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01187 ATGGGTGCTCCAAAGCAGAAATGGACTCAAGAAGAAGAAGCAGCCCTTAAAGCCGGAATTGTTAAGCATGGAGCCGGAAAGTGGCGAACGATACTCAAGGATCCTGAATTCAGTGGTGTCTTATACCTGCGTTCGAATGTAGATCTAAAGGATAAGTGGAGAAACATGACTGTAATGGCTAATGGATGGGGCTCCAGAGAGAAAGCGAGGTTAGCACTCAAGAAGCAACATGTTCCTCAACTAGATGAGAATTCTTTGGCTCTCACTGTTATGGCCCAAAGCGATGAAGAAATAGTAGATGCTATGCCTTCGGTTGTTTCTTCTGATAAGCCTCACCATGCTAAGCCGCACAGATCTACAGTAAGGTCAGAATTGTATTTACAATTTTTGTTTATTACCACAGTTTTTTTTGGAGCAATAATTTCTAGGTTGGACAATCTTATATTGGAGGCAATTTCTATGTTGAGGGAGCCTGGTGGTTCTAACAAGACAGCTATTGCTTCTTACATAGAGGACCAATATTGGGCGCCTCCAGACTTCAAGAGGCTCTTGTCCGCAAAACTAAAGCTTTTGACAGTTAGCGGAAAACTAAGCAAGGTAAGCAAATTCAATAGGGGTAATAATGTTACTGATAACGATAATGTTTTGACTGATTTGGTTATATTTTCCCAGGTGAAACGCAAATACAGGATTGCGCCAGCTTTAGCGATTTCTAGCAAAAGAAGCTCCTCCATGTTATTGTTGGAAGGTCGGCAGAGGCTTTCTCCAAGAGTCGATAAGGACTTAATTATTCTTACAAAAGACCAGATTGACTTAGAATTAGGTAGAATGAGGATGATGACTGCCGAAGAGGCAGCTGAGGCAGCTGCTCTGGCAGTTGCAGAAGCAGAAGCAGCCATTGCAGAAGCTGAAGAGGCAGCCAGGGAGGCCGAGGCCGCTGAAGCTGATGCTGAAGCAGCTCAGGCTTTTGCAGAAGCTGCCTTAAAAACGGTCAACGGAAGGAACCACCCAAAGACGGTAATCTTTCTAGAATGCTTTTGCAATTTCACGCCTACTGAATGTTTGTTGATTAATGTCTGA 1080 43.52 MGAPKQKWTQEEEAALKAGIVKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMTVMANGWGSREKARLALKKQHVPQLDENSLALTVMAQSDEEIVDAMPSVVSSDKPHHAKPHRSTVRSELYLQFLFITTVFFGAIISRLDNLILEAISMLREPGGSNKTAIASYIEDQYWAPPDFKRLLSAKLKLLTVSGKLSKVSKFNRGNNVTDNDNVLTDLVIFSQVKRKYRIAPALAISSKRSSSMLLLEGRQRLSPRVDKDLIILTKDQIDLELGRMRMMTAEEAAEAAALAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAALKTVNGRNHPKTVIFLECFCNFTPTECLLINV 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41558356 41560438 + Bda023003.2 Bda06g01187 8769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01187 359 SUPERFAMILY Winged helix DNA-binding domain 143 201 IPR036390 -
Bda06g01187 359 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bda06g01187 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bda06g01187 359 Gene3D - 2 59 - -
Bda06g01187 359 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Bda06g01187 359 CDD SANT_TRF 6 57 - -
Bda06g01187 359 SMART h15plus2 138 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda06g01187 359 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 140 233 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda06g01187 359 Coils Coil 279 323 - -
Bda06g01187 359 SMART sant 4 59 IPR001005 -
Bda06g01187 359 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 339 - -
Bda06g01187 359 Pfam linker histone H1 and H5 family 145 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda06g01187 359 PANTHER SINGLE MYB HISTONE 4 1 339 IPR044597 GO:0003691
Bda06g01187 359 Gene3D - 142 211 IPR036388 -
Bda06g01187 359 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01187 K09422 MYBP; transcription factor MYB, plant - csin:114320961 344.739
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00691 Bda-Chr4:55710398 Bda06g01187 Bda-Chr6:41558356 1.27E-33 dispersed
Bda06g01187 Bda-Chr6:41558356 Bda14g01537 Bda-Chr14:26096950 5.24E-104 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01537 . 1 293 Single Myb Histone (SMH) Gene Family AT1G49950 62.0 5.1e-75 278.1
Bda06g01187 . 1 341 Single Myb Histone (SMH) Gene Family AT1G49950 56.2 2.4e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16060 PF00538 Linker_histone 4.40E-07 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01187 Bda_Chr06 FPKM 18.101255 20.180292 10.813791 12.231231 5.323754 5.915893 5.21587 3.525919 3.841238