Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01187 ATGGGTGCTCCAAAGCAGAAATGGACTCAAGAAGAAGAAGCAGCCCTTAAAGCCGGAATTGTTAAGCATGGAGCCGGAAAGTGGCGAACGATACTCAAGGATCCTGAATTCAGTGGTGTCTTATACCTGCGTTCGAATGTAGATCTAAAGGATAAGTGGAGAAACATGACTGTAATGGCTAATGGATGGGGCTCCAGAGAGAAAGCGAGGTTAGCACTCAAGAAGCAACATGTTCCTCAACTAGATGAGAATTCTTTGGCTCTCACTGTTATGGCCCAAAGCGATGAAGAAATAGTAGATGCTATGCCTTCGGTTGTTTCTTCTGATAAGCCTCACCATGCTAAGCCGCACAGATCTACAGTAAGGTCAGAATTGTATTTACAATTTTTGTTTATTACCACAGTTTTTTTTGGAGCAATAATTTCTAGGTTGGACAATCTTATATTGGAGGCAATTTCTATGTTGAGGGAGCCTGGTGGTTCTAACAAGACAGCTATTGCTTCTTACATAGAGGACCAATATTGGGCGCCTCCAGACTTCAAGAGGCTCTTGTCCGCAAAACTAAAGCTTTTGACAGTTAGCGGAAAACTAAGCAAGGTAAGCAAATTCAATAGGGGTAATAATGTTACTGATAACGATAATGTTTTGACTGATTTGGTTATATTTTCCCAGGTGAAACGCAAATACAGGATTGCGCCAGCTTTAGCGATTTCTAGCAAAAGAAGCTCCTCCATGTTATTGTTGGAAGGTCGGCAGAGGCTTTCTCCAAGAGTCGATAAGGACTTAATTATTCTTACAAAAGACCAGATTGACTTAGAATTAGGTAGAATGAGGATGATGACTGCCGAAGAGGCAGCTGAGGCAGCTGCTCTGGCAGTTGCAGAAGCAGAAGCAGCCATTGCAGAAGCTGAAGAGGCAGCCAGGGAGGCCGAGGCCGCTGAAGCTGATGCTGAAGCAGCTCAGGCTTTTGCAGAAGCTGCCTTAAAAACGGTCAACGGAAGGAACCACCCAAAGACGGTAATCTTTCTAGAATGCTTTTGCAATTTCACGCCTACTGAATGTTTGTTGATTAATGTCTGA 1080 43.52 MGAPKQKWTQEEEAALKAGIVKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMTVMANGWGSREKARLALKKQHVPQLDENSLALTVMAQSDEEIVDAMPSVVSSDKPHHAKPHRSTVRSELYLQFLFITTVFFGAIISRLDNLILEAISMLREPGGSNKTAIASYIEDQYWAPPDFKRLLSAKLKLLTVSGKLSKVSKFNRGNNVTDNDNVLTDLVIFSQVKRKYRIAPALAISSKRSSSMLLLEGRQRLSPRVDKDLIILTKDQIDLELGRMRMMTAEEAAEAAALAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAALKTVNGRNHPKTVIFLECFCNFTPTECLLINV 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41558356 41560438 + Bda023003.2 Bda06g01187 8769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01187 359 SUPERFAMILY Winged helix DNA-binding domain 143 201 IPR036390 -
Bda06g01187 359 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bda06g01187 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bda06g01187 359 Gene3D - 2 59 - -
Bda06g01187 359 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Bda06g01187 359 CDD SANT_TRF 6 57 - -
Bda06g01187 359 SMART h15plus2 138 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda06g01187 359 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 140 233 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda06g01187 359 Coils Coil 279 323 - -
Bda06g01187 359 SMART sant 4 59 IPR001005 -
Bda06g01187 359 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 339 - -
Bda06g01187 359 Pfam linker histone H1 and H5 family 145 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda06g01187 359 PANTHER SINGLE MYB HISTONE 4 1 339 IPR044597 GO:0003691
Bda06g01187 359 Gene3D - 142 211 IPR036388 -
Bda06g01187 359 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00691 Bda-Chr4:55710398 Bda06g01187 Bda-Chr6:41558356 1.27E-33 dispersed
Bda06g01187 Bda-Chr6:41558356 Bda14g01537 Bda-Chr14:26096950 5.24E-104 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16060 PF00538 Linker_histone 4.40E-07 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01187 K09422 - csin:114320961 344.739