Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01203 ATGAAGTTTATGAAACTTGGATCAAAGCCAGATGCATTACAGACAGAGGGGAACAACATTCGGTATGTAGCGAGTGAGTTGCCTTCAGATATCGTAGTTAACGTCGGTTGCGTGAAGTTTTACCTGCACAAGTTTCCTCTCTTATCGAAGAGTGTCCGATTGCAAAAATTGATCACGGCAGCCACAACTGAAGAAAATGGCGATGAAGTTGACATTTCAGACATTCCAGGCGGTCCTTCTTCATTCGAAATATGCGCCAATTTTTGTTATGGCATGATCGTTACCCTCAATGCATACAATGTTGTTGGGGCCAGGTGCGCGGCTGAGTACCTTGGAATGGATGAGACTATAGAGAGAGGCAATCTTGTTTACAAGATAGACGTCTTCCTTAATTCGAGTGTTTTTCGGAGCTGGAAGGACTCGATAATTGTTCTTCAGACTAGCAAGTTAATATTGCCGTTTTTGGAGGAGCATAAATTGGTGAATAATTGCATAGAATCTATAACCACTAAAGCGTGCATACATGTTTCCAAAGTCGACTGGTCTTATACGTATAACCGAAAGAAACTCGTGGAGGAGAATGTGTGTGATCCAAACTGGAACGGTGTGAGAAACCGGTCAGTGCCTAAAGACTGGTGGGTTGAGGACTTGTGCGAACTCGAAATCGATTTGTATAAACAAGTCGTGACAAATATAAAGGCAAAATCGTCACTTTTTAATGAAGTGGTCGGGGAATCTGTGAAAGCTTATGTATATAGATGGCTCCCGGGCTTGAACAAGGGCGTGATTCAACGCGGGGACGTGGAGAAATATCGATCGGTCATGGATTCGATCGTATGGCTCTTACCAGTTGAAAAAGGGTGCGTTTCTTGTAGTTTTTTGCTAAAGTTGTTGAAAGCAGCCATTTGTGTGGACTGTGATTATATGTGTAAGAATGAGTTGGTGAGGAGAATAGGACAGCAACTCGAGGAGGCTTCTGTTAGCGATCTCTTGATCCGGGGAATGGAAGGAGAAACTACGGTGTACGACGTTAGAACAGTGCAGAAATTGGTGGAAGAGTTCAAGTTGCAGGATCGGAACGATGAGATTGAAATACTCGAAGAAGATCACGGGTGCGAAGGGCGGATAAAATCAGGTATTTTATCTGATGCCTCCAAGCTGATGGTGGCGAAACTAATAGACGGGTATCTGGCCGAAATTGCAAAGGATCCAAATTTACCGCTATCGATGTTTGTTGAGCTTGCCGAATCAGTGTCTGACATCTCTCGACCTTCTCACGACGGGCTCTATCTGGCAATCGACACGTTCCTCAAGGTAAGACTACCTCTTAAACCTCTTTGCATTAATTTCTCGAGACCAAGACGTGATCAGTTGTTACTCTATGATATATCAGTTTCTTTCACTATGCAGGAGCACAACGGAATAAGCAAGAGCGAGAGGAAGAAAATATGCAAACTGATGGATTGCAAGAAGCTGTCGGTCGAGGCCTGTGTGCATGCAGTGCAAAACGAGAGACTTCCATTACGAGTAGTCGTGCAAGTTTTATTTTTCGAGCAAGTCAGAGCCTCCAAGTCGTCCGGAAGCAGCACGCCCGACCTGCCAAAGGGCATTAAGGACCTAAACTGCGGGTCTCTTGGGAGCTCAAGATCTGCCACTACAAACACAGAGGAAGAATGGGACATTCCAGCCACTGCCGAAGAGCTAAGGGCCCTTAAGGGCGAGCTGGCCTCGTTAAGGCTGGCAAACGGGGCCAGACATGGCAACCAAAATGAGGGAACAGGTGGAATCGACAAAGCTGCAGTGAATAAAATGAAGGGTCTGATTAAGTCTAGGAAGATATTTGCAAAGCTGTGGCCGAGCAGAGGGTCCGGTGAAAATAGCAGTTCGGATTCTTCGGAAAGTCCAGCAGGCTCTGCAAACCCCGAAGAAGCTAAGTCTACGCCTTCCGGCAATAGAAGACATTCAGTGTCTTGA 1974 45.64 MKFMKLGSKPDALQTEGNNIRYVASELPSDIVVNVGCVKFYLHKFPLLSKSVRLQKLITAATTEENGDEVDISDIPGGPSSFEICANFCYGMIVTLNAYNVVGARCAAEYLGMDETIERGNLVYKIDVFLNSSVFRSWKDSIIVLQTSKLILPFLEEHKLVNNCIESITTKACIHVSKVDWSYTYNRKKLVEENVCDPNWNGVRNRSVPKDWWVEDLCELEIDLYKQVVTNIKAKSSLFNEVVGESVKAYVYRWLPGLNKGVIQRGDVEKYRSVMDSIVWLLPVEKGCVSCSFLLKLLKAAICVDCDYMCKNELVRRIGQQLEEASVSDLLIRGMEGETTVYDVRTVQKLVEEFKLQDRNDEIEILEEDHGCEGRIKSGILSDASKLMVAKLIDGYLAEIAKDPNLPLSMFVELAESVSDISRPSHDGLYLAIDTFLKVRLPLKPLCINFSRPRRDQLLLYDISVSFTMQEHNGISKSERKKICKLMDCKKLSVEACVHAVQNERLPLRVVVQVLFFEQVRASKSSGSSTPDLPKGIKDLNCGSLGSSRSATTNTEEEWDIPATAEELRALKGELASLRLANGARHGNQNEGTGGIDKAAVNKMKGLIKSRKIFAKLWPSRGSGENSSSDSSESPAGSANPEEAKSTPSGNRRHSVS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41850425 41853454 + Bda023022.1 Bda06g01203 8785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01203 657 MobiDBLite consensus disorder prediction 543 557 - -
Bda06g01203 657 Pfam NPH3 family 464 497 IPR027356 -
Bda06g01203 657 Pfam NPH3 family 211 440 IPR027356 -
Bda06g01203 657 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 449 654 IPR029960 GO:0009958
Bda06g01203 657 ProSiteProfiles BTB domain profile. 29 98 IPR000210 GO:0005515
Bda06g01203 657 MobiDBLite consensus disorder prediction 621 657 - -
Bda06g01203 657 MobiDBLite consensus disorder prediction 524 557 - -
Bda06g01203 657 MobiDBLite consensus disorder prediction 618 657 - -
Bda06g01203 657 Gene3D Potassium Channel Kv1.1; Chain A 10 121 IPR011333 -
Bda06g01203 657 PANTHER OS12G0117600 PROTEIN 1 439 IPR043454 -
Bda06g01203 657 SUPERFAMILY POZ domain 22 118 IPR011333 -
Bda06g01203 657 ProSiteProfiles NPH3 domain profile. 211 521 IPR027356 -
Bda06g01203 657 PANTHER OS12G0117600 PROTEIN 449 654 IPR043454 -
Bda06g01203 657 Pfam BTB/POZ domain 27 118 IPR000210 GO:0005515
Bda06g01203 657 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 439 IPR029960 GO:0009958
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01203 - - - jre:109014208 883.634
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01203 Bda08g00675 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00012 Bda-Chr4:120064 Bda06g01203 Bda-Chr6:41850425 0 dispersed
Bda06g01203 Bda-Chr6:41850425 Bda11g01288 Bda-Chr11:13553616 2.13E-121 dispersed
Bda06g01203 Bda-Chr6:41850425 Bda08g00675 Bda-Chr8:7124228 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01203 Bda_Chr06 FPKM 3.631148 2.217031 6.912743 6.03941 5.379318 4.496178 7.021986 8.282865 6.575369