Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01211 ATGGGAGGTAACCAAAAGAGTTACAGTGCGAATTCAAATGATTATAAGCTTCTGGAAGAGATTGGACATGGTGCCAGTGCAACGGTATACAGAACGATCTATCTTCCGCTCAATGAAGTGGTGGCTGTCAAGTGCTTAGATCTCGACCGCTGCAATAGCAATCTGGATGACATACGAAGGGAGGCTCAAACCATGAGTTTAATTGATCATCCAAATGTTGTAAGAGCATATTGCTCATTTGTGGTTGAACGGAACCTATGGGTTGTCATGCCATATATGGCAGAGGGTTCTTGTTTGCATCTTATGAAGATAGCATATCCAGATGGATTTGAAGAGGATGTTATTGGATCTATACTAAAAGAAACTCTTAAAGCTTTGGAGTACCTTCATTTCCAAGGACATATTCACCGAGATGTAAAGGCTGGAAATATACTACTCGATTACAATGGAGTGGTAAAGCTTGCTGACTTTGGTGTTTCTGCTTGCATGTTTGACACCGGTGATAGACAACGATCTAGAAATACATTTGTTGGAACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAAGTGGATATAATTTCAAGGCTGATATCTGGTCATTTGGTATTACAGCATTGGAGTTGGCTCACGGTCATGCACCATTTTCGAAATATCCTCCAATGAAGGTACTTCTCATGACCATTCAAAATGCTCCTCCTGGGCTAGATTATGATCGCGATAAAAAATTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACGAAGAGGCCGACTGCAGAAAAGCTTTTAAAACATTCATTTTTCAAGAATATAAAGCCTTCGGAGTTTTCAGTGAAGAAATTGTTTGATGACTTACCTCCTCTTTGGAATCGTGTAAAGGCACTCCAGCTTAAAGATGAAGCACAACTAGCTCTAAAGAAAATGCCTTCAGCTGAACAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTCGATATCGAGGATTTAAAAGCCCAAGCTTCATTGGTGCGTGATGATGATGATGATGATTTGGCAGAGATGAGGGAACATGAAGAAATCATCAAATCATTTGTTAGTGATAAGGGCACAGCACAATCAGCTGGCGAGGAGTTGGTGCAAGTTGAATGGTTGAGCAAAAAGGGTAAGACTACGGAAAACGAATGGCCTGAATCTGGGACCCAAGAGGAAAGTGGTCTGAAAAAAATTGGGACTAGAACTGAGGCAGCAGCTTCTACTTCTGGCCAAGACATTGCTCAGGCAAAGAATAAAACCCAAATTCCAAAAATTCGGCAAACATTAAGCGGGCCTCTGATACCTGGTGTTGTGCTCAGTCATTCATTATCAGAAAGAGCTCCTTACCCGGAGAGGTGTGAGTATGAAATTCAACCACCTGCAGAAAAAAATAATCGCGACCTCCGACAAACACCAAACTTTAGTGGTCCTTTGATGCTGCCAAATCGTGCTTCAGCAAACAGCTTATCTGCACCAATAAAGTCTTCTGGAGAGATTCATTGGATGACAAGTCAAAGGCTAATCTCGTGCAAAAAGGGCGGTTTTCTGTAA 1605 41.93 MGGNQKSYSANSNDYKLLEEIGHGASATVYRTIYLPLNEVVAVKCLDLDRCNSNLDDIRREAQTMSLIDHPNVVRAYCSFVVERNLWVVMPYMAEGSCLHLMKIAYPDGFEEDVIGSILKETLKALEYLHFQGHIHRDVKAGNILLDYNGVVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGSGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNIKPSEFSVKKLFDDLPPLWNRVKALQLKDEAQLALKKMPSAEQEALSQSEYQRGVSAWNFDIEDLKAQASLVRDDDDDDLAEMREHEEIIKSFVSDKGTAQSAGEELVQVEWLSKKGKTTENEWPESGTQEESGLKKIGTRTEAAASTSGQDIAQAKNKTQIPKIRQTLSGPLIPGVVLSHSLSERAPYPERCEYEIQPPAEKNNRDLRQTPNFSGPLMLPNRASANSLSAPIKSSGEIHWMTSQRLISCKKGGFL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41982305 42004719 + Bda023031.1 Bda06g01211 8793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01211 534 CDD STKc_OSR1_SPAK 13 276 - -
Bda06g01211 534 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g01211 534 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g01211 534 Gene3D Phosphorylase Kinase; domain 1 4 91 - -
Bda06g01211 534 SUPERFAMILY Protein kinase-like (PK-like) 13 331 IPR011009 -
Bda06g01211 534 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 2 516 - -
Bda06g01211 534 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bda06g01211 534 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g01211 534 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 516 - -
Bda06g01211 534 Gene3D Transferase(Phosphotransferase) domain 1 96 329 - -
Bda06g01211 534 Coils Coil 302 322 - -
Bda06g01211 534 MobiDBLite consensus disorder prediction 395 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01279 Bda-Chr1:48193562 Bda06g01211 Bda-Chr6:41982305 0 dispersed
Bda06g01211 Bda-Chr6:41982305 Bda08g00655 Bda-Chr8:6798768 0 dispersed
Bda06g01211 Bda-Chr6:41982305 Bda06g01226 Bda-Chr6:42217132 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69686 PF00069 Pkinase 1.30E-60 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01211 - - mnt:21398437 818.15