Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01214 ATGTATTTAATTTTTTTTCCTTGTTCCAGGTATATTGATGCTTGTAGGAGGCATGGAGTCCCACCGAATACTGCAGTTTTATCCGGTTTCTTTAAGGCTGATGTCGAAAGATCCGGCTATCAGCAATGGATCCTGTATATCTACTTGAGCCATCTTAAGGATATTGATTTTCTTCCACTACTTGAAGTATGCATGGAACTTGATTCCTCTGAAATTGAAGCAGTTGATATATTTGATGAATCTTCATGCGCGTTCAATGGGGAGTTTGCTTTATTGTTGATGCGTGCTATTAATGGAAAACTTCGAAAAGTTGATCTCCACGATTTATCTTTTGGAAAGAACTTCCTACGGGATTTGTCCCAGCGAGGTTTAAAATGTCAAGATTTAACATTGAGGTCATCTCATTTTCGGAAACTCAATTTAGTTGGGGAATTCACACGAATACACACCCTCAAACTTGATTTCAGCGCTTCGCTCACTAGTTTCCGTGAGGATTGCTTTGCTTGCATGCCCAACCTGAGGTTACTGTCACTGTGTGACACAAGAATTTCAAATCTTTGGACAACGTCAGCAGCACTTTCTAAACTACCTTCTTTACTGGATCTTCGGTTTCAACATTGGCTATGTTGTAATGATAACGTGCCTCATTCTTCAACAACTGGTTCAAAGTCTGATGATAGAAGAGATCCCTACGAACTAAGTGACTGTTTTGATGATGATTATTTTTCTTTTGATCCTACTTTAAGTTTTGGAAATGAGATTTTGCCCATGGTTTCGCGTAATAGTGCAACTAATAATCACGATGTTCTTGGCATGATTGAAGATTCATCAGATGATAGCGAAGTGGATTTTTCGAATCACCCTCAAGATCCTGGCTTATCAGATGTATCCTTGTACTGGGGTTCTTGGTTGAACGGACAGGGTGATCGACTGGAGGTTGGTGAAGATACTGGGCATATTGCTGATGTCTCATTAAAATATGTTTCTTATGATGCTTCCCCGATATGCTTCGCAAAACATTATAGAGAGTACATGATAGCATCTTTACCCAATTTGGAAGTCTTAGATAACTTGCCCATTAGAAAGATCGACAGAGAAAGGGCTATTAGTACATATTCGCAGTACTTTGAGTATCTTCCGTACCAAAGGAGGCATAAGGAGAGTTTAGTGCGTATTATTCAGAACCGTGAAATCAAAGCAAGCCAGAACCGCCAGTGGAGTTCCAAGCAAAAGATTATTTTTCCTTTGAGAAAGTCTCAAAGTTCTTATGCTAGGTCTCTTTGTGCTGCAAAAGTGGGATCTTCTACTTGTCCTTTTCTGCGTCCTCTGTCTGTTTTGAGTGATGATTTGGGAGATGGAGGCCGGAGATTTCGTCCCCAACAATTTGAGTACCATCCATCTGATCCTAGCCTTATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTAGTGAATCACGAGAACGGGAAAATCGTTAGTTATATCCCATCGATTGGAGAAATGAATAGTGTGCTTGGACTCTGTTGGCTCAAGAATCATCCCTCAAAGCTCATAGCAGGTTCAGACAATGGCTCGCTAAAATTGTACGATATCAGACACGCCATCTACATTCAGAGGCATATACAGCATAACTGGGTCAGCAAGCTTTGA 1650 40.42 MYLIFFPCSRYIDACRRHGVPPNTAVLSGFFKADVERSGYQQWILYIYLSHLKDIDFLPLLEVCMELDSSEIEAVDIFDESSCAFNGEFALLLMRAINGKLRKVDLHDLSFGKNFLRDLSQRGLKCQDLTLRSSHFRKLNLVGEFTRIHTLKLDFSASLTSFREDCFACMPNLRLLSLCDTRISNLWTTSAALSKLPSLLDLRFQHWLCCNDNVPHSSTTGSKSDDRRDPYELSDCFDDDYFSFDPTLSFGNEILPMVSRNSATNNHDVLGMIEDSSDDSEVDFSNHPQDPGLSDVSLYWGSWLNGQGDRLEVGEDTGHIADVSLKYVSYDASPICFAKHYREYMIASLPNLEVLDNLPIRKIDRERAISTYSQYFEYLPYQRRHKESLVRIIQNREIKASQNRQWSSKQKIIFPLRKSQSSYARSLCAAKVGSSTCPFLRPLSVLSDDLGDGGRRFRPQQFEYHPSDPSLMVFGTLDGEVVVVNHENGKIVSYIPSIGEMNSVLGLCWLKNHPSKLIAGSDNGSLKLYDIRHAIYIQRHIQHNWVSKL 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42075700 42084371 + Bda023036.1 Bda06g01214 8796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01214 549 SMART LRRcap_2 338 356 IPR003603 -
Bda06g01214 549 Gene3D - 456 547 IPR015943 GO:0005515
Bda06g01214 549 Gene3D Ribonuclease Inhibitor 316 377 IPR032675 -
Bda06g01214 549 SUPERFAMILY WD40 repeat-like 458 533 IPR036322 GO:0005515
Bda06g01214 549 SUPERFAMILY L domain-like 105 209 - -
Bda06g01214 549 Gene3D Ribonuclease Inhibitor 92 224 IPR032675 -
Bda06g01214 549 PANTHER BNAC09G30780D PROTEIN 9 535 IPR046377 GO:0071493|GO:0080008
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01214 - - - jre:108996385 631.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01213 Bda-Chr6:42068864 Bda06g01214 Bda-Chr6:42075700 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g664 . . Bda06g01214 . Bpe07g00264 . . Bma12g00269 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1012 Cone10ag1029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015699 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 10
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01214 Bda_Chr06 FPKM 7.80298 7.974601 9.072097 8.790883 10.16788 9.189574 10.518765 10.654553 10.452342