Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01216 ATGCATCAAATACAGGTAAACAGTCAAAGTCACTCACTTGAAGATGTTCTCCAGAATTCTGGCATTGAAGAGTTAGAAACGCCTATTAAAAAGGCAGCCAAACATTCTAAACAAGTAAGCTGTCAAGCTTCAAAATCTAGGCGGAAAAGATATATGCTAAGATCATTGGGTCACACTGAAAGAGTTTTGCGCTCAAAGACAAGAGGGAATGCCACAACTCCTAAACCAACTAACCATGTCAGTATTGTTAGAAGTAGAAGAGATGGAAAAGGTAGAAAGAAGAATAAGAGAAAGGAGATTCAAGTAGCTGACAAGTTTTCAAAAATTAGAAAATGTCTAAGATATTTGCTCCATCGAATGACATATGAACAAAGCTTCATTGCTGCTTATTCTGGTGAAGGTTGGAAAGGATACAGCTTAGAGAAGTTAAAGCCAGAAAAGGAGCTTCAGCGGGCCACAAATGAAATAATGCGACGCAAGTTGAAAATAAGAGATCTGTTTAAACATCTTGATTTGCTTTGTGTTGAGGGAAGATTTTCAGAATCTCTTTTCGATTCTGAAGGACAAATTGACAGTGAGGATATATTCTGCGCAAAATGTGGATCAAAAGAAATGTCTACTACTGATGACATTATACTCTGTGATGGGGCCTGTGACCGTGGTTTCCACCAGTTCTGTTTAGAACCGCCATTGCTAAATGAAGATATTCCGCCAGATGATGAGGGTTGGCTGTGCCCTGGTTGTGATTGCAAAGTTGATTGCATCGATTTGCTTAATGACTCTCAAGGAACACAATATTCTCTCACTGACAGTTGGGAGAATGTTTATCCTGAGGCTGCCGCTGCAGCAGCTGCTGGACACAATAATGATCAGAACTTTGGCCTTCCTTCAGATGATTCAGATGATAATGATTTTGATCCAGATGGTCAAGAAACTGATGATCAGGGAGGCGAATCAAGTTCTGATGTATCTGAGAATAATTCTGAATCTGAAAAATTGGAGGCTTCACCTACAGACAACCAATATGTAGGACTTCCTTCTGATGATTCAGACGATGATGATTATAATCCTGGGGCTCCAGATACTGAAGAAAATATTAAGTCAGAAAGTTCTAGTTCCGATTTTACATCGGATTCTGAGAATCTTGCAGCCATTCTCGAAGATGATGGGCCATCTAGGAATGAAAATGACTCTGTCTCTTCAACACCAAATGGTACCAATTTCCCTGGAGTAATCGACAAAAAGGGCAGCAAAAATGGTCGCGGAAAGCATTCATTGAAGGACGAGCTTTCATCTATACTAGAGTTGGGACATCTAAATGATAGACTTTCACCTATTGTCAGCAGACGGCATGTGGAGCGATTGGACTATAAGAAGCTACATGATAGGAAGAAAAATTGTGGACTGGTTTCTCCAGCTCAACAAAATGGAAAATCTTCAGTTGTTGAGAAGGAAGAAACATATGGAATTGTTTTTTCTGACTCAAGTGATGATGAAGGTCGGACTGAAATTGCTGCAGAGAGGAAGAAAAATTGTGGACTGGTTTCTCCAGCAGCACAAAATGGAAAATCTTTAGGTGTTAAGAAGGAAGATAATGTTCTGGGTAAGCATGATGCAAAGGGGAGTGAAATCACTCCGAGAAAGAATTCTCATCGTACACGAATGGTAGAACATACAAATGATTCTTTGATAAAAACACAAGAAGGATCCTCCAAGCCTGGTTCAGCTGGTGGAAGAGCTAAATCTACTTTCGGTAAACTAGGGGAAGCAGTAGTTCAGAAACTTCGTATATCATTCAAAGAAAATCAGTACCCAGACAAACGTGCAAAAGAAACTTTGGCTAAAGATCTAGGACTCAATTTCAAGCAGGTTAGCAAATGGTTTGAAAACACTCGCTGGAGTACACGTCATCCATCGCATGTGAAGGCAACTGCAAATGCAAATATTGATGAATCTGAAAGCGCTTTGCAGAAAGGCACTCCGATGTCTCACTCATTCATAAAACCTGAGCCTGAATTGGATACCAGTCACAGAGGTGGCACTTGCAGCAGCGCTCATCTCATAAAATCTCCCAGGGCCAGTGATGTTCCATCATGCGAAAGTGATGATACAAAGGATGGCATTTTGGGGAGTCATATGACCAGTAGACGAGAGCCTAATTCCATTAGATCTAGAAAAAGAAAAGGCAGATCAGAACATATGGCTGTCGATAATGATGCTAGTATTTTGGAGAAACAAAAGCCTCTTGCTGGGTCATCAAAAGCCCATGAAAGTCGAGCCAACGGCCATATTAGGACAAGACGACAGACATTGATTGCTGCCAATACTGATAGTGCACAAAAATCTCTTGTTGAGTCATCAAAAGCCAATGTAGATCGAGAAAATCACCGGATTAGGACAAGAAGACAGAAATTGATTGCTTAA 2424 40.51 MHQIQVNSQSHSLEDVLQNSGIEELETPIKKAAKHSKQVSCQASKSRRKRYMLRSLGHTERVLRSKTRGNATTPKPTNHVSIVRSRRDGKGRKKNKRKEIQVADKFSKIRKCLRYLLHRMTYEQSFIAAYSGEGWKGYSLEKLKPEKELQRATNEIMRRKLKIRDLFKHLDLLCVEGRFSESLFDSEGQIDSEDIFCAKCGSKEMSTTDDIILCDGACDRGFHQFCLEPPLLNEDIPPDDEGWLCPGCDCKVDCIDLLNDSQGTQYSLTDSWENVYPEAAAAAAAGHNNDQNFGLPSDDSDDNDFDPDGQETDDQGGESSSDVSENNSESEKLEASPTDNQYVGLPSDDSDDDDYNPGAPDTEENIKSESSSSDFTSDSENLAAILEDDGPSRNENDSVSSTPNGTNFPGVIDKKGSKNGRGKHSLKDELSSILELGHLNDRLSPIVSRRHVERLDYKKLHDRKKNCGLVSPAQQNGKSSVVEKEETYGIVFSDSSDDEGRTEIAAERKKNCGLVSPAAQNGKSLGVKKEDNVLGKHDAKGSEITPRKNSHRTRMVEHTNDSLIKTQEGSSKPGSAGGRAKSTFGKLGEAVVQKLRISFKENQYPDKRAKETLAKDLGLNFKQVSKWFENTRWSTRHPSHVKATANANIDESESALQKGTPMSHSFIKPEPELDTSHRGGTCSSAHLIKSPRASDVPSCESDDTKDGILGSHMTSRREPNSIRSRKRKGRSEHMAVDNDASILEKQKPLAGSSKAHESRANGHIRTRRQTLIAANTDSAQKSLVESSKANVDRENHRIRTRRQKLIA 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42099996 42107517 + Bda023038.1 Bda06g01216 8798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01216 807 MobiDBLite consensus disorder prediction 529 554 - -
Bda06g01216 807 MobiDBLite consensus disorder prediction 363 380 - -
Bda06g01216 807 SUPERFAMILY FYVE/PHD zinc finger 186 254 IPR011011 -
Bda06g01216 807 ProSiteProfiles Zinc finger PHD-type profile. 194 251 IPR019787 -
Bda06g01216 807 PANTHER HOMEOBOX PROTEIN HAT3.1 5 662 - -
Bda06g01216 807 Pfam PHD-finger 196 251 IPR019787 -
Bda06g01216 807 MobiDBLite consensus disorder prediction 696 712 - -
Bda06g01216 807 MobiDBLite consensus disorder prediction 288 425 - -
Bda06g01216 807 MobiDBLite consensus disorder prediction 653 807 - -
Bda06g01216 807 MobiDBLite consensus disorder prediction 787 801 - -
Bda06g01216 807 CDD homeodomain 592 639 IPR001356 GO:0003677
Bda06g01216 807 MobiDBLite consensus disorder prediction 515 554 - -
Bda06g01216 807 ProSitePatterns 'Homeobox' domain signature. 613 636 IPR017970 GO:0000981|GO:0006355
Bda06g01216 807 MobiDBLite consensus disorder prediction 67 98 - -
Bda06g01216 807 Gene3D - 586 648 - -
Bda06g01216 807 MobiDBLite consensus disorder prediction 297 315 - -
Bda06g01216 807 SMART HOX_1 577 642 IPR001356 GO:0003677
Bda06g01216 807 ProSiteProfiles 'Homeobox' domain profile. 578 638 IPR001356 GO:0003677
Bda06g01216 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 253 IPR013083 -
Bda06g01216 807 MobiDBLite consensus disorder prediction 316 345 - -
Bda06g01216 807 MobiDBLite consensus disorder prediction 768 786 - -
Bda06g01216 807 Pfam Homeodomain 592 633 IPR001356 GO:0003677
Bda06g01216 807 SMART PHD_3 196 249 IPR001965 -
Bda06g01216 807 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 5 662 - -
Bda06g01216 807 CDD PHD_PRHA_like 196 248 IPR045876 -
Bda06g01216 807 ProSitePatterns Zinc finger PHD-type signature. 197 248 IPR019786 -
Bda06g01216 807 SUPERFAMILY Homeodomain-like 574 637 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01216 - - - qlo:115967836 676.011
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01216 Bda08g00666 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01900 Bda-Chr1:55153904 Bda06g01216 Bda-Chr6:42099996 1.28E-47 transposed
Bda06g01216 Bda-Chr6:42099996 Bda08g00666 Bda-Chr8:6956748 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16061 PF00628 PHD 3.80E-10 CL0390 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01216 Bda_Chr06 FPKM 22.761442 26.15324 5.598856 6.193521 1.564345 0.934847 1.185954 1.947624 1.31741