Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01235 ATGGCGACTCTTCAAGATATTGGGGTTTCTGCGTTGATCAATCTCATCAGTGCGTTTACATTTTTGCTTGCCTTTGCTTTGCTGAGAATCCAACCCATTAACGACAGAGTTTACTTTCCGAAATGGTACATCAGCGGAGGAAGAACCAGTCCGAGGAGATCGAGGAATTTTGTGTCCAAATTTGTCAATTTGAATTTCACGACTTACCTTACCTTTTTGAACTGGATGCCGCAGGCTATGAAGATGAGCGAGGCTGAAATTATCACTCATTCTGGGCTAGACTCTGCTGTTTTTCTCAGAGTTTACACTCTTGGGTTAAAGATTTTCTTTCCAGTGACAATCTTGGCGCTCCTTGTTCTTATTCCAGTCAATGTCTCGAGTGGGACATTATTTTTCTTGAAGAAAGAACTGGTTGTGAGTGATATTGATAAGCTTTCAATATCGAATGTCCATCCTAAATCTTCAAGTTACAATTTATTTGAAGTCAGGTTTTTTGTTCACATTGGCTTGGAATACTTGTTCACAATATGGACTTGCTACATGCTATTCAAGGAATATGATTATGTAGCATCATTGAGGTTGAATTTCTTGGCATCACAACCCCCGTGTGCTGAGCAATTTACCGTATTAGTCAGGAATATTCCTCGCGTTTCTGGAAAATCGATATCTGATATTGTAGAAAATTTCTTTCAGAAAAACCATCCAGATCATTATCTTTCTCATCAGGCCATATACGATGCCAATAAATTTGCTAAGCTCGTTCAGAGAAGAGACCGGTTAATCAATTGGCTTGATTACTACCAGCTTAAGTTCGAAAGGCATCCAAACAAGAGGCCAACTTGTAAGACTGGATTTGGTGGACTTTGGGGGAGAAAGGTCGATGCGATTGAGTACTACAAACAACAGATTAAAGGGCTTGAAAGAAAAATGTTATTTGAGCGTCAAAAAATTCTCAAGGATCAAAAATCTATTCTCCCAGCAGCTTTTGTTTCGTTTAATTCTCGTTGGGGGGCTGCTGTTTGCGCTCAGACGCAGCAAAGTAGAAATCCTACACTTTGGCTGACGAACTGGGCCCCGGAGCCTCGTGACGTGTACTGGCGGAACCTGGCTATACCCTTTGTTTCCCTAAGCATCAGGAAACTACTCATTTCCATCTTAGTGTTTGCTTTGGTTTTCTTCTACATGATACCGATTGCTTTCGTGCAATCCCTTGCAAATTTGGAAGGGCTTGAGCGGGTTGCTCCTTTCCTCAGACCAGTCATAGAAATGAAATTTATCAAGTCGTTTCTACAGGGTTTTCTTCCTGGTCTGGCCCTTAAGATTTTTCTGTATATCCTGCCTACAGTTCTAATGATAATGTCGAAAATTGAAGGGTACACAGCCTTATCGACGCTAGAACGGAGGGCTGCAGCTAAATATTACTACTTTATGCTGGTCAATGTGTTTCTGGGGAGTATAGTTACTGGTACAGCTTTTGAGCAACTGCATTCCTTCCTTCACCAACCACCTACTGAAATTCCCAGAACAATTGGAGTCTCAATACCAATGAAAGCCACTTTCTTTATAACATATATAATGGTTGATGGCTGGGCCGGCATTGCAAGCGAAATTCTTCGATTAAAACCGCTCGTCATTTATCATCTCAAAAACATATTTCTGGTGAAGACTGAGAGAGACAGAGAGAAAGCAATGGACCCTGGGGGTGTGGAGTTTCCTGAAACTCTGCCAAGCCTGCAATTATACTTCATTTTGGGAGTAGTGTACGCCGTCGTTACTCCAATCCTGCTTCCGTTCATTCTTGTCTTCTTTGCATTTGCGTACTTGGTTTATCGACATCAGATAATCAACGTCTATAATCAACAATACGAGAGTGCTGGTGCATTTTGGCCACACGTCCATACTCGTATAATTGCTAGCTTGTTAATATCTCAATTACTTTTGTTGGGTTTACTGAGTACAAAAAAGGCTGCCAATTCTACTCCTTTGCTTATTGTCTTACCTGTACTCACATTGGCATTCCACAAATACTGTAAGAATCGGTTTGAGCCCGCTTTTCGGAAATACCCTCTTGAGGAAGCCATGGCTAAAGATATATTGGAGAAGAGAACCGAACCGGAAGCAAACCTGAAAGCGTTCTTGGCCGACGCGTATCTCCATCCGATATTTCAATCGTTTGAGGAAGAAGAATTAGTGGATGTACGAGTCGAGAAACCCACATCTCCAGTTGATAGTCCAATCAGCGAACTCAGCTGTCCGTCCCCGCCACATCAAGTTCACCAGCCACCCTCCTCGACACAATATGTCTACCACCCCGACTCTCCGCCTCACTATGTTTATCCCCCACAATCTCCTCCTCACTATATCTATGATTATGAGTCCCACCCTTGA 2388 42.29 MATLQDIGVSALINLISAFTFLLAFALLRIQPINDRVYFPKWYISGGRTSPRRSRNFVSKFVNLNFTTYLTFLNWMPQAMKMSEAEIITHSGLDSAVFLRVYTLGLKIFFPVTILALLVLIPVNVSSGTLFFLKKELVVSDIDKLSISNVHPKSSSYNLFEVRFFVHIGLEYLFTIWTCYMLFKEYDYVASLRLNFLASQPPCAEQFTVLVRNIPRVSGKSISDIVENFFQKNHPDHYLSHQAIYDANKFAKLVQRRDRLINWLDYYQLKFERHPNKRPTCKTGFGGLWGRKVDAIEYYKQQIKGLERKMLFERQKILKDQKSILPAAFVSFNSRWGAAVCAQTQQSRNPTLWLTNWAPEPRDVYWRNLAIPFVSLSIRKLLISILVFALVFFYMIPIAFVQSLANLEGLERVAPFLRPVIEMKFIKSFLQGFLPGLALKIFLYILPTVLMIMSKIEGYTALSTLERRAAAKYYYFMLVNVFLGSIVTGTAFEQLHSFLHQPPTEIPRTIGVSIPMKATFFITYIMVDGWAGIASEILRLKPLVIYHLKNIFLVKTERDREKAMDPGGVEFPETLPSLQLYFILGVVYAVVTPILLPFILVFFAFAYLVYRHQIINVYNQQYESAGAFWPHVHTRIIASLLISQLLLLGLLSTKKAANSTPLLIVLPVLTLAFHKYCKNRFEPAFRKYPLEEAMAKDILEKRTEPEANLKAFLADAYLHPIFQSFEEEELVDVRVEKPTSPVDSPISELSCPSPPHQVHQPPSSTQYVYHPDSPPHYVYPPQSPPHYIYDYESHP 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42430161 42434912 - Bda023065.1 Bda06g01235 8817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01235 795 PANTHER TO DEHYDRATION PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 738 - -
Bda06g01235 795 Pfam Late exocytosis, associated with Golgi transport 7 185 IPR032880 -
Bda06g01235 795 MobiDBLite consensus disorder prediction 743 770 - -
Bda06g01235 795 Pfam Cytosolic domain of 10TM putative phosphate transporter 206 368 IPR027815 -
Bda06g01235 795 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 738 IPR045122 GO:0005227
Bda06g01235 795 MobiDBLite consensus disorder prediction 738 795 - -
Bda06g01235 795 Pfam Calcium-dependent channel, 7TM region, putative phosphate 379 651 IPR003864 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01235 K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel - pvy:116125945 1265.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00141 Bda-Chr4:3523057 Bda06g01235 Bda-Chr6:42430161 7.41E-19 dispersed
Bda06g01235 Bda-Chr6:42430161 Bda07g00901 Bda-Chr7:10618839 0 dispersed
Bda06g01235 Bda-Chr6:42430161 Bda06g00377 Bda-Chr6:5958789 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g784 . . Bda06g01235 . . Bpe07g00244 Bma07g01005 . Cmo06g00621 Cmo16g01249 . . . . . Cpe14g00994 . . . . . . . . Cla10g00118 Cam10g0115 Cec10g0124 Cco10g0124 Clacu10g0121 Cmu10g0968 Cre10g0378 . . . . Lsi07g01149 . . Cme06g02425 . . . . . . . Bma12g00247 . . . Cma06g00614 Cma16g01202 Car06g00547 Car16g01132 . . . . . . . . . . . . . . . . . Csa03g00119 Chy06g02185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008449 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01235 Bda_Chr06 FPKM 2.007156 2.12732 2.896547 3.131581 2.736359 2.848683 3.239058 3.766531 2.965987