Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01239 ATGGCCGCTCTGCAGTACCTTGATTCGCTTCGTAATTCTCACCCTGAGCTCTCCGATTGGTACAACACGCTCGCAGATCTGTATCAGAGGAAGCTCTGGCACCAGCTTACTCTCAAGCTTGAGCAGTTTGTGGCCCTAGCTGTTTTTCAGGCTGGGGATGCTCTCATACAACTATATCACAATTTCATCACGGACTTTGAAACTAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTCATTGTTTCTCGGCGATATTCAGAAAAAGAAGCTGCCATCAGTTATCTTGAAGGGGTAGTCGAGAAACTCAAGGCTACTAGAGAGCAGCGCATAGATGAGCCAGTTCTGTACATCAGGATGCAAATAGCCTTATTTAAGTTAGAGCAGGGGGACCAAAAGGAGTGTAAGAAACTTTTGGAAGATGGGAAGAGTGCGCTTGATAGCTTGACTGACATTGATCCCTCTGTTTTTGCTAGCTATTATTGGGTTTCGTCCCAATACCACAAATTTCGCCGAGAATTTGCAGATTTCTATAAAAGTGCCCTTCTTTACCTGGCATACACTTCAGTGGAGTCTCTTTCGGATTCCTTCAAGCTGGATTTGGCGTTTGATTTGTCCCTCTCTGCTCTTCTGGGAGAAAACATCTATAACTTTGGAGAGCTTCTTGCCCATCCCATTATAACAAGCCTCTCAGGCACGAAGGTCGAATGGCTTTACTATATTCTTCAGGCTTTCAATTCTGGTGATCTGGCCCGCTATCAAGAATTATGTCAACTGCATAATGCTGCTTTAAGAGCTCAGCCGGCATTGGTTGAGAATGAGAAGAAGCTATTAGAGAAGATTAACATTCTCTGCTTGATGGAAATTATCTTCAGCCGGCCATCTGAAGATCGAACTATTCCACTCAGTGTCATTGCAGAACGCACAAAGCTTTCCATAGAAGACGTAGAGCATCTTCTGATGAAGAGTCTTTCTAAGGAGCTAGGACGTGTTTCAAAGCAGCTATCAAATCTCGAACAAGAGTGTGTTGAGTTGAGGAAAGAAAGACACAGGAAAAGCGAGCAACTTAGAGTTGTGTTTTCAAAGAAAGATGAAAATTTGGATGATGGCCATGGTTCAAAAACTAATTATACCTGTAAAGCTATTGGAGTGCAAACTGACAATGTTACTCATGCCCCCAAACTACCTCCCTGCGAGACGCAGTTTGCAAGTCAAAATCTCTCCAACAAATTGATAGCCATCTGGGCTTTTCAAAATGAAGCAAAGTTGGGTCAAAATTTGTTTTCCGATCTGGTTAAGTCCTGTGAAGCAGATTTTCATGTTCTTTTTGGGTGCATGGGAAACCAGCCATCTCATGGAACATCTTTACAATTTTCCATCAGCGATGTGGATTCTCCTGAAGCTGCAAAAGTGTCTGAACTCTATTCAATGTTGACAAAGATAAATAATGGAATGGTACCGTTAGAGGGTTTGTTTGGACCTCTACTTGATCTTTGCATTCTTGACAATGTTGTGATTGCTCAAAGGTCTTTGCATGTTCTACATGTGTTTTTGAGGCACTTGTTGTGTAATGAAAGGAATTTCAGAAGAAGGAAAAATGTCACGGTCGAGGGACTTACACGTGGATATCAAGCGGGAGAGGACTTGGATGTGAACCGTGTGGAGTTATCTCATCCTACTGATATCTCACACGGGGTTAGACATCCTGATCTCAAGAACAGGCACTTGAATGTTGGCACATATTCAGTTTCTGCGATAGAGTGGTACTCTCTCTTTAAATTGATGTGTCAAATTTTGATGAAGCATACAGAACAAAGTGCGAGAGTCGAGGCAGTCTCGATTATGAATCTGATTCTAATGAGAAGTAATGCTTTCACAGAGAGGAAAAAGTTTGACCACTCCCTTCTTTTTGAAAGTGTGATACATTTACTTAAAAAGGAAGCTGGATTGCGGGTGCAAAAGCTTGCTGTGCATTTTCTATTTCTGATACTAAATTGTCCTTCACTGTTGGGCACATTCTGCTCTGCTCGTAAGGATGGCACAACCACTTCTTGTGCAGAAGATTCTGCAGAATACTCTTTAAGTCCTGAAAACTTTGGCTTCATCCTTCTTGGCTTAGTGGAATGTTTAACGTCCTCTGGTTTTGGCATACAGGAGATAAAACTTCGAAGAAATACTATTATTTTGCTCGCTTTTCTATCCTCATCTGGAAGACCTGGATTTGAGATAGTTGTCAATCAAAAAGTACATAGGGACTCAAGCCTTCTCATGCTGATTTTGCAGCTAGTGGTGTCTGAGGTAGACAGAGAAAGATCTCGAGTATCATGCCGAGCATTTTTGTCTTGTAGGACCTTACTCATAAGGGAGTCTCTGATACTACTGAACAGACTTGTATCTAATCCTGCATACTCTGCCACTGTGTTGCGAGCACTAACAACCAGCAGAGATATGGCCAACCTGACTATAGATATAGCTAAGAGATTGTCCTGGAAAAGCCAGGTAAGTGGGCATTTTGATGGCATGATGAAGAAAATAAGAGAAGTCGAGATTGTTGACTTAGCCGGAGTATTTAAGAAACGTGTTTTTACATATTTAGGTGATATTTCATGA 2610 41.76 MAALQYLDSLRNSHPELSDWYNTLADLYQRKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRRYSEKEAAISYLEGVVEKLKATREQRIDEPVLYIRMQIALFKLEQGDQKECKKLLEDGKSALDSLTDIDPSVFASYYWVSSQYHKFRREFADFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGENIYNFGELLAHPIITSLSGTKVEWLYYILQAFNSGDLARYQELCQLHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIEDVEHLLMKSLSKELGRVSKQLSNLEQECVELRKERHRKSEQLRVVFSKKDENLDDGHGSKTNYTCKAIGVQTDNVTHAPKLPPCETQFASQNLSNKLIAIWAFQNEAKLGQNLFSDLVKSCEADFHVLFGCMGNQPSHGTSLQFSISDVDSPEAAKVSELYSMLTKINNGMVPLEGLFGPLLDLCILDNVVIAQRSLHVLHVFLRHLLCNERNFRRRKNVTVEGLTRGYQAGEDLDVNRVELSHPTDISHGVRHPDLKNRHLNVGTYSVSAIEWYSLFKLMCQILMKHTEQSARVEAVSIMNLILMRSNAFTERKKFDHSLLFESVIHLLKKEAGLRVQKLAVHFLFLILNCPSLLGTFCSARKDGTTTSCAEDSAEYSLSPENFGFILLGLVECLTSSGFGIQEIKLRRNTIILLAFLSSSGRPGFEIVVNQKVHRDSSLLMLILQLVVSEVDRERSRVSCRAFLSCRTLLIRESLILLNRLVSNPAYSATVLRALTTSRDMANLTIDIAKRLSWKSQVSGHFDGMMKKIREVEIVDLAGVFKKRVFTYLGDIS 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42494257 42513889 - Bda023071.2 Bda06g01239 8821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01239 869 Coils Coil 321 355 - -
Bda06g01239 869 PANTHER PROTEASOME COMPONENT (PCI) DOMAIN PROTEIN-RELATED 1 328 - -
Bda06g01239 869 Pfam PCI domain 238 324 IPR000717 -
Bda06g01239 869 ProSiteProfiles PCI domain profile. 174 349 IPR000717 -
Bda06g01239 869 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 328 IPR035298 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01239 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - zju:107430950 575.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01239 Bda-Chr6:42494257 Bda06g01241 Bda-Chr6:42535558 0 proximal
Bda06g01239 Bda-Chr6:42494257 Bda08g00645 Bda-Chr8:6607839 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g761 . . Bda06g01239 . . Bpe07g00241 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0503 Cone12ag0504 . . . . Chy04g00135 . . . . . . . . Bma12g00242 Sed05g0248 . . . . . . . Cpe15g00183 Bhi05g00427 Tan07g2035 Cmetu04g1723 Lac11g2458 Hepe06g1809 . Lcy12g1982 Cla09g01078 Cam09g1135 Cec09g1140 Cco09g1160 . . Cre09g1097 . Csa03g04569 . Cme04g00156
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007127 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 5 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01239 Bda_Chr06 FPKM 3.114286 0.0 2.338114 2.173761 8.521249 4.791918 10.416822 0.0 0.0