Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01242 ATGATTCAGAGCAACTTGTACAAATATTTGAGCATTGTGCTTGATGGACGAGAACGATTTGAGGAAGAGGTCGCATATAGGATGAAAGCAATAAATCTCCATGACCAAGTTTCTGTGGCTGGTAACGATTCTAATGATTGCGTCTACTCAATCAACCCACGACTGAAACACTTCTCTGACTGGCTTCTGGACATCATAGCAACGGGAGATTTGGATGCATTTTTTCCTGCCGCAACTCGTGAATATGCTCCATTAGTAGAAGAGCTGTGGAAGGATCCTGCTATCCAGGAAACATACAAAAGAAAAGATGAACTGCACTTTCTTCCAGATGTCTCCGAGTACTTCTTAAGCCGGGCTGTGGAGGTGTCTAGCAATGAATATGAACCTTCAGAAAGAGACATTATATATGCAGAAGGGGTGACTCAAGGAAATGGCTTAGCTTTCATGGAATTCTCGCTCGACGATCGCAGTCCAATGTCTGAAACCTACACTGATAATTTAGAGGCTCCACCCCCACCGCTGACCAAATACCAGCTTATAAGGGTAAATGCGAAGGGGATGAACGACGGGTGTAAATGGTTGGAAATGTTCGAAGACGTGCGGGTTATCGTCTTCTGCATCGCACTCAGTGATTTCGACCAAATGTGGATTTCGCCAGACGGTAGTGGGAGTGGAAACATACTTCAAAACAAGATGATGCAGAGCAAAGAGCTGTTCGAGACGATGATCCGACAACCTTGTTTCAAGGAAACACCATTTGTCTTAATCCTAAACAAATACGACATCTTCGAGGAGAAGATAAAAAGGATCGCTTTGAGTTCGTGTGAATGGTTCAACGATTTTCGGCCGCTGCTGCCTCACAACAGCAACCAGACGTTAGCTCATCAAGCATATTATTATGTGGCGATGAAGTTTAAGGATTTGTACTTGTCGTTGACGGGTCGGAAGTTGTTCGTTTGGCAGGCAAAAGCCCGAGATAGGGTGACGGTGGATGAGGCTTTTAAGTATATCAGAGAGGTGGTGAAGTGGGATGAAGAGAGAGAGGAGAACTTCTATAATGGACCTGAAGATTCATTTTACAGTACAGATATCAGCTCCTCCCCATTTGTTAGATGA 1116 44.27 MIQSNLYKYLSIVLDGRERFEEEVAYRMKAINLHDQVSVAGNDSNDCVYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKDELHFLPDVSEYFLSRAVEVSSNEYEPSERDIIYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTKYQLIRVNAKGMNDGCKWLEMFEDVRVIVFCIALSDFDQMWISPDGSGSGNILQNKMMQSKELFETMIRQPCFKETPFVLILNKYDIFEEKIKRIALSSCEWFNDFRPLLPHNSNQTLAHQAYYYVAMKFKDLYLSLTGRKLFVWQAKARDRVTVDEAFKYIREVVKWDEEREENFYNGPEDSFYSTDISSSPFVR 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42564758 42567142 - Bda023074.1 Bda06g01242 8824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01242 371 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 1 368 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda06g01242 371 Pfam G-protein alpha subunit 1 341 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda06g01242 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 343 IPR027417 -
Bda06g01242 371 ProSiteProfiles G-alpha domain profile. 1 352 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda06g01242 371 Gene3D - 1 138 IPR011025 GO:0007165
Bda06g01242 371 Gene3D - 155 351 IPR027417 -
Bda06g01242 371 PRINTS Alpha G protein (transducin) signature 253 262 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda06g01242 371 PRINTS Alpha G protein (transducin) signature 200 228 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda06g01242 371 PRINTS Alpha G protein (transducin) signature 127 149 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda06g01242 371 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 1 368 - -
Bda06g01242 371 SUPERFAMILY Transducin (alpha subunit), insertion domain 1 137 IPR011025 GO:0007165
Bda06g01242 371 SMART galpha_1 8 351 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01242 - - - zju:107430957 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01240 Bda-Chr6:42515789 Bda06g01242 Bda-Chr6:42564758 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01242 Bda_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0