Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01271 ATGCACAAGGGAAAGAGAAAGAGAGAGGAGCTTGAGAAAGACTATGAAGCGAGGAAGTATGGTGTAGTGGGAGAAGCTGAGAAAAGTGTAGGTGGTAAAATTGTGGGAGAGAAGAGGAAAGTAGTTGACAATCCTGCTGATCTGCTGGTTTCTAAGGAAGGCTTTGATGATGAAGACAAGCTTTTGAGAACGGTGTTTGTCGGTAATTTGCCGTTGAAGGTGAAGAAGAAAGCTTTGTTGAAGGAATTTAGCCAATTTGGCGAGATGGAATCCGTGAGGATTCGTTCCGTAGCTGTCACAGATAGCAAACTATCGAAAAAAGGGGCAATCATAACCAAGCAAATCAATGATTCCATAGACAGTGTACATGCATACATTGTTTTCAAAACAGAGCAGTCGGCACATGCTTCTTTGTCGCATAACATGGCTATGTTTGCAGGAAATCATGTCCGTGTAGATCGGGCATGCCCACCTCGAAAGAAGCTGAAAAGTGAGAATGCTCCAATATATGATCACAAAAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTGAAGGATGAAGAATTGTATCAACTGTTTTGTGGAATCGACACTGTTGGATCCAGCACTGAAGCCGTCCGAGTAATTAGAGATCCTCATACAAATATCGGAAAGGGCTTTGCATACGTTTTATTTAAAACAAGGCAAGCAGCCAGTATGATTGCTAAAAGGCGGAACTTAAAGTTAAGAGAGCGGGACCTGAGGCTCTTTCAGGCCAAGCCTAACTTGACTCCATCCAAGAGACAGAAGGAATCAGTTTCACCGGATGGTGCTTCCCCAGCAAAGTTAGCCAGGATAGACAGCGGCAGGGTGGAAAAGACAAAAACACCCTTGTCTTATCAGGGCTTGCGAGCCAGCAAATCTGGTGTTCAGAAAAGGATTAGCATGAAAAAGTCGGTGCCTGAGAAGTTAAAGCCAAAGTCGAAGCGAGAGAAGCCGGTGGTGCAGAAGGGGAAAAGACCAGCCGTTGCAGCCAGGAAGGCCAAAGCAAATGCAATGAAGGAAGGCCTTGTGTTGAACTCAAAACCAAGTGAGATGAAGCGGAAATTAGACAGCCGAACACCAGAGAGTTCTCGACCCAACAAGAAAGTGAAGAAATTTAGGTAA 1149 44.47 MHKGKRKREELEKDYEARKYGVVGEAEKSVGGKIVGEKRKVVDNPADLLVSKEGFDDEDKLLRTVFVGNLPLKVKKKALLKEFSQFGEMESVRIRSVAVTDSKLSKKGAIITKQINDSIDSVHAYIVFKTEQSAHASLSHNMAMFAGNHVRVDRACPPRKKLKSENAPIYDHKRTVFVGNLPFDVKDEELYQLFCGIDTVGSSTEAVRVIRDPHTNIGKGFAYVLFKTRQAASMIAKRRNLKLRERDLRLFQAKPNLTPSKRQKESVSPDGASPAKLARIDSGRVEKTKTPLSYQGLRASKSGVQKRISMKKSVPEKLKPKSKREKPVVQKGKRPAVAARKAKANAMKEGLVLNSKPSEMKRKLDSRTPESSRPNKKVKKFR 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43287934 43290785 - Bda023116.1 Bda06g01271 8853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01271 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 255 IPR000504 GO:0003723
Bda06g01271 382 MobiDBLite consensus disorder prediction 300 382 - -
Bda06g01271 382 CDD RRM1_RBM34 63 153 IPR034220 -
Bda06g01271 382 SUPERFAMILY RNA-binding domain, RBD 57 164 IPR035979 GO:0003676
Bda06g01271 382 Gene3D - 163 272 IPR012677 -
Bda06g01271 382 SMART rrm1_1 175 251 IPR000504 GO:0003723
Bda06g01271 382 SMART rrm1_1 64 153 IPR000504 GO:0003723
Bda06g01271 382 PANTHER RNA-BINDING PROTEIN 34 5 381 - -
Bda06g01271 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 157 IPR000504 GO:0003723
Bda06g01271 382 MobiDBLite consensus disorder prediction 310 331 - -
Bda06g01271 382 MobiDBLite consensus disorder prediction 252 288 - -
Bda06g01271 382 MobiDBLite consensus disorder prediction 355 376 - -
Bda06g01271 382 CDD RRM2_RBM34 175 251 IPR034221 -
Bda06g01271 382 SUPERFAMILY RNA-binding domain, RBD 170 263 IPR035979 GO:0003676
Bda06g01271 382 Gene3D - 59 162 IPR012677 -
Bda06g01271 382 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 5 381 - -
Bda06g01271 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 99 IPR000504 GO:0003723
Bda06g01271 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 237 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01271 K14837 NOP12; nucleolar protein 12 - zju:107430535 452.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01271 Bda-Chr6:43287934 Bda06g01291 Bda-Chr6:43513404 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01271 Bda_Chr06 FPKM 4.248395 4.675478 20.402752 19.129219 55.914257 53.849979 60.296982 14.818122 16.936947