Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g01281 ATGTCTAATTTCTGGTTTTCTATTTGGTTTCAGGCTTTTTGGCCTTCATTGGTGATGAAAAAATGGCTGAATATCAAGCCTAAGGTGTATGATTTCAGCGAGGATGAAATCGACACCGAAACAGAGAGTGAAGACGATGCTTCATCTCTTAAGGATGCAAGAATTGATGTGGATGAAGACCATCTGCACTTCAGCTATCCGATCAGGCACCGTAGAGGAAAATCAGAGACTCTGAGAGTTCAATACATAAATACGAAGGATGTGAGGGTTACGATTGGCACTTGGAACGTTGCCGGACAATCCCCGTGTGAAGACCTTGCATTAGACGATTGGCTCCAGACAGAAGATCCAGCAGATTTATACATAATTGGTTTTCAGGAGGTTGTTCCTTTGAATGCTGGGAATGTGCTAGGAGCGGAGGATAGCCGGCCGATACCAAAGTGGGAGGCGATCATTCGAAGAACTTTGAACAAGTCTTTCGAGCCTGAAAGCAAACACAAAAGCTATAGTGCCCCTCCTTCTCCTGTTATGAGGACATCTTCTGTTGAAGATGTACTTGCAGATGAGGCCATTGATAATCAATTAGACATGATGACCGAAGAATTTGACCAGGAACTGCATGGTTTAACTACCAGAAATCTACAGTTGAAAAGGATTTATGGCATTGATTCCGATAGTAGATTGGACTGGCCTGAGCAGTCATTAGATTCAGTTCCTCAAGTTCTCTCTTCAAATTCAAAACTCCGACGAGTATTCAGCAGCTCTGCCAGAATAGGCTTCAATTCGTTTGAGAATTTTATGTCCTTTGGTCCTCATCAATTTGCTTTAAATGTTGGTGGGTTAAGAAGAACGTACCATAGTTCGGGAAACTTGATATCGATCTTGAAGGAACAGCAAGAGAGGGAAGAAGTGATCGATTCTCTCTCTCATGTGAGTGATAGTTTATTTGAAGAGGAAGATGATGTATTCTCTGAAGGACTTATGGAGGAGGAAAATGGTGGATTTGCTACTACAAATGGAGCAAAATCACGTTCTAAATATGTGCGAATAGTTGGAAAGCAGATGGTGGGGATTTATGTGTCGGTTTGGGTTCGCAAGAGGTTGAGAAGACATGTAAACAATTTGAAAGTTTCTCCGGTTGGGATCGGTCTGATGGGTTACTTGGGAAATAAGGGATCTGTTTCTATTAGCATGTCCCTTTTTCAATCAAGGCTGTGTTTTGTTTGTTCTCATCTAACATCTGGTCAGAAAGATGGGGCCGAGCAGAAGCGAAATGCAGATGTGAATGAAATAATAAGGCGGACTCGTTTTTCGTCTGTCGTAGATGCAGAATCAAATCAACCTCAGACCATCCCGTGTCACGACAAGATATTCTGGTTTGGAGATCTCAACTATCGGCTTAATATGTTGGATTCGGATGTAAGGCAACTCGTAAATCTAAAACAGTGGGATGAACTCATAAACTATGATCAGCTTAGCCGAGAACTTCACAGTGGGCGTGTATTCGAGGGATGGAAAGAGGGAGCTATAGACTTCCCGCCTACTTATAAATATGAAATCAACTCCACCCGATATGTTGGAGAGAATCCGAAAGAGGGAGAGAAGAAAAGATCTCCAGCTTGGTGTGATCGAATACTATGGCTTGGAAAGGGAATAAAACAGCTTTGTTACAAGCGATCTGAGATTCAACTCTCGGATCATCGGCCAGTCAGTTCAATCTTTGTGGCAGAAGTTGAAGTTTTAGACCGACGAAAGCTGCAAAGAGCGCTTAACATCACAAGCTCAGCAGTTCATCCTGAAATTTTCTTTGAAGAAATTGATGAAAGATAA 1830 42.19 MSNFWFSIWFQAFWPSLVMKKWLNIKPKVYDFSEDEIDTETESEDDASSLKDARIDVDEDHLHFSYPIRHRRGKSETLRVQYINTKDVRVTIGTWNVAGQSPCEDLALDDWLQTEDPADLYIIGFQEVVPLNAGNVLGAEDSRPIPKWEAIIRRTLNKSFEPESKHKSYSAPPSPVMRTSSVEDVLADEAIDNQLDMMTEEFDQELHGLTTRNLQLKRIYGIDSDSRLDWPEQSLDSVPQVLSSNSKLRRVFSSSARIGFNSFENFMSFGPHQFALNVGGLRRTYHSSGNLISILKEQQEREEVIDSLSHVSDSLFEEEDDVFSEGLMEEENGGFATTNGAKSRSKYVRIVGKQMVGIYVSVWVRKRLRRHVNNLKVSPVGIGLMGYLGNKGSVSISMSLFQSRLCFVCSHLTSGQKDGAEQKRNADVNEIIRRTRFSSVVDAESNQPQTIPCHDKIFWFGDLNYRLNMLDSDVRQLVNLKQWDELINYDQLSRELHSGRVFEGWKEGAIDFPPTYKYEINSTRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIQLSDHRPVSSIFVAEVEVLDRRKLQRALNITSSAVHPEIFFEEIDER 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43400791 43404653 + Bda023128.1 Bda06g01281 8863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g01281 609 Gene3D Endonuclease/exonuclease/phosphatase 71 175 IPR036691 -
Bda06g01281 609 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 10 605 - -
Bda06g01281 609 SUPERFAMILY DNase I-like 80 593 IPR036691 -
Bda06g01281 609 SMART i5p_5 267 582 IPR000300 GO:0016791|GO:0046856
Bda06g01281 609 Gene3D Endonuclease/exonuclease/phosphatase 276 600 IPR036691 -
Bda06g01281 609 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 10 605 IPR045849 GO:0004445|GO:0046855
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g01281 K24221 IP5P1_2; type I inositol polyphosphate 5-phosphatase IP5P1/2 [EC:3.1.3.56] - tcc:18606093 868.611
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01281 Bda07g00843 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01281 Bda-Chr6:43400791 Bda13g01416 Bda-Chr13:36862151 9.18E-157 dispersed
Bda06g01281 Bda-Chr6:43400791 Bda13g00109 Bda-Chr13:1501349 1.10E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g605 . Blo03g00111 Bda06g01281 . . Bpe07g00226 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0619 Cone12ag0604 . . . . . . . . Bda07g00843 . . . . Bma12g00225 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004106 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g01281 Bda_Chr06 FPKM 0.266048 0.995997 0.0 0.0 0.0 0.0 0.0 0.0 0.0